Digitize Me, Visualize Me, Search Me

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[[Image:LifetrackingCover1.jpg|right|318x450px|LifetrackingCover1.jpg]] Open Science and its Discontents [http://www.livingbooksaboutlife.org/books/ISBN_Numbers ISBN: 978-1-60785-267-4] ''edited by'' [http://www.livingbooksaboutlife.org/books/Digitize_Me,_Visualize_Me,_Search_Me/bio Gary Hall] __TOC__ == [http://www.livingbooksaboutlife.org/books/Open_science/Introduction '''Introduction: White Noise: On the Limits of Openness (Living Book Mix)'''] == One of the aims of the Living Books About Life series is to provide a 'bridge' or point of connection, translation, even interrogation and contestation, between the humanities and the sciences. Accordingly, this introduction to ''Digitize Me, Visualize Me, Search Me'' takes as its starting point the so-called ‘computational turn’ to data-intensive scholarship in the humanities. The phrase ‘[http://www.thecomputationalturn.com/ the computational turn]’ has been adopted to refer to the process whereby techniques and methodologies drawn from computer science and related fields – including science visualization, interactive information visualization, image processing, network analysis, statistical data analysis, and the management, manipulation and mining of data – are being increasingly used to produce new ways of approaching and understanding texts in the humanities - what is sometimes thought of as 'the digital humanities'. [http://www.livingbooksaboutlife.org/books/Open_science/Introduction (more...)] == Open Science == === It’s An Open (Science), Open (Access), Open (Source), Open (Notebook) World === ;[http://usefulchem.wikispaces.com/ Open Notebook Science ] ;Patrick O. Brown, Michael B. Eisen, Harold Varmus&nbsp; :[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0000036 Why PLoS Became a Publisher] ;Sally Murray, Stephen Choi, John Hoey, Claire Kendall, James Maskalyk, and Anita Palepu&nbsp; :[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091592/pdf/OpenMed-02-e1.pdf??tool=pmcentrez Open Science, Open Access and Open Source Software at ''Open Medicine''] === Community Science === {{#widget:Vimeo|id=12873908}} ;[http://www.psfk.com/2010/09/biocurious-a-community-lab-for-biotechnology.html BioCurious: A Community Lab for Biotechnology] ;Richard Stallman&nbsp; :[http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0020047 Free Community Science and the Free Development of Science] === 'This Revolution Will Be Digitized’: Online Tools for Open Science === ;[http://biogang.openwetware.org/ Biogang] ;Bill Hooker&nbsp; :[http://3quarksdaily.blogs.com/3quarksdaily/2007/01/the_future_of_s.html The Future of Science is Open, Part 3: An Open Science World] ;Chris Patil and Vivian Siegel&nbsp; :[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2675795/ This Revolution Will Be Digitized: Online Tools for Radical Collaboration] === Open Science Publishing === ;Philip E. Bourne&nbsp; :[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877727/?tool=pmcentrez#pcbi.1000787-Hey1 What Do I Want from the Publisher of the Future?] ;Cameron Neylon&nbsp; :[http://pirsa.org/08090038/ Science in the Open/or/How I Learned to Stop Worrying and Love My Blog] == Open Knowledge == === Access to Knowledge === ;[http://okfn.org/ Open Knowledge Foundation] ;Gaelle Krikorian and Amy Kapczynski, eds&nbsp; :[http://www.soros.org/initiatives/information/focus/access/articles_publications/publications/age-of-intellectual-property-20101110/age-of-intellectual-property-20101110.pdf ''Access to Knowledge In the Age of Intellectual Property''] === New Models for Open Sharing and Open Research === ;Anne H. Margulies&nbsp; :[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200 A New Model for Open Sharing] ;Thomas B. Kepler, Marc A. Marti-Renom, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd&nbsp; :[http://www.publish.csiro.au/nid/51/paper/CH06095.htm Open Source Research - The Power of Us] === Open Knowledge and its Discontents === ;J.J. King&nbsp; :[http://www.metamute.org/proudtobeflesh The Packet Gang: Openness and its Discontents] ;Michael Gurstein&nbsp; :[http://gurstein.wordpress.com/2011/07/03/are-the-open-data-warriors-fighting-for-robin-hood-or-the-sheriff-some-reflections-on-okcon-2011-and-the-emerging-data-divide/ Are the Open Data Warriors Fighting for Robin Hood or the Sheriff?: Some Reflections on OKCon 2011 and the Emerging Data Divide] == Open Data == === Data-Intensive Science === ;Vincent S. Smith&nbsp; :[http://www.biomedcentral.com/1756-0500/2/113 Data Publication: Towards a Database of Everything] ;Tony Hey, Stewart Tansley, Kristen Tolle, eds&nbsp; :[http://research.microsoft.com/en-us/collaboration/fourthparadigm/4th_paradigm_book_part4_complete.pdf Scholarly Communication, ''The Fourth Paradigm: Data-Intensive Scientific Discovery''] === World of Data === ;[http://www.freeourdata.org.uk/ Free Our Data] ;Simon Rogers&nbsp; :[http://www.guardian.co.uk/news/datablog/2010/nov/09/canada-open-data How Canada Became an Open Data and Data Journalism Powerhouse] === We Can Know It For You === ;Omer Tene&nbsp; :[http://epubs.utah.edu/index.php/ulr/article/viewArticle/136 What Google Knows: Privacy and Internet Search Engines] ;Daniel Chandramohan, Kenji Shibuya, Philip Setel, Sandy Cairncross, Alan D. Lopez, Christopher J. L. Murray, Basia Żaba, Robert W. Snow, Fred Binka&nbsp; :[http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0050057 Should Data from Demographic Surveillance Systems Be Made More Widely Available to Researchers?] == '''Digitize Me''' == === Encode Me/Decode Me === ;[http://www.ornl.gov/sci/techresources/Human_Genome/home.shtml Human Genome Project] ;The ENCODE Project Consortium&nbsp; :[http://pubmedcentralcanada.ca/picrender.cgi?accid=PMC3079585&blobtype=pdf&tool=pmcentrez A User's Guide to the Encyclopaedia of DNA Elements (ENCODE) ] ;[http://www.decodeme.com/about-decodeme deCODEme] === Life-Tracking === {{#widget:Vimeo|id=27381297}} ;[http://quantifiedself.com Quantified Self] ;Gary Wolf&nbsp; :[http://xrl.us/bh3d4g The Data-Driven Life] ;Aiden R. Doherty and Alan F. Smeaton&nbsp; :[http://doras.dcu.ie/15300/1/Sensors-03-154-Doherty-ie-edited.pdf Automatically Augmenting Lifelog Events Using Pervasively Generated Content from Millions of People] ;Jennifer S. Beaudin, Stephen S. Intille, and Margaret E. Morris&nbsp; :[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794006/?tool=pmcentrez#ref1 To Track or Not to Track: User Reactions to Concepts in Longitudinal Health Monitoring] === The Neurological Turn: or, ‘How the Internet Gets Inside Us' === <youtube>NhLnoZFCDBM</youtube> <br> ;Adam Gopnik&nbsp; :[http://www.newyorker.com/arts/critics/atlarge/2011/02/14/110214crat_atlarge_gopnik The Information: How the Internet Gets Inside Us] ;N. Katherine Hayles&nbsp; :[http://www.sciy.org/2010/11/24/hyper-and-deep-attention-the-generational-divide-in-cognitive-modes-by-n-katherine-hayles/ Hyper and Deep Attention: The Generation Divide in Cognitive Modes] ;Anna Munster&nbsp; :[http://computationalculture.net/article/nerves-of-data Nerves of Data: The Neuological Turn In/Against Networked Media] == '''Visualize Me''' == === What is Visualization? === ;Lev Manovich&nbsp; :[http://manovich.net/blog/wp-content/uploads/2010/10/manovich_visualization_2010.doc What is Visualization?] ;Nathan Yau&nbsp; :[http://flowingdata.com/2011/02/23/data-visualization-meets-game-design-to-explore-your-digital-life/ Data Visualization Meets Game Design to Explore your Digital Life] ;[http://bloom.io/ Bloom] {{#widget:Vimeo|id=8569187}} ;Keiichi Matsuda :[http://www.keiichimatsuda.com/augmented.php Augmented (hyper)Reality: Domestic Robocop] === Mood-mapping === ;Celeste Biever&nbsp; :[http://www.newscientist.com/article/dn19200-twitter-mood-maps-reveal-emotional-states-of-america.html Twitter Mood Maps Reveal Emotional States of America] ;[http://www.newscientist.com/articlevideo/dn19200/221111468001-twitter-mood-maps-reveal-emotional-states-of-america.html Twitter mood video] <youtube>ZglPWYb8X2o</youtube> [http://www.moodscope.com/] ;[http://www.moodscope.com/ Moodscope] ;[http://www.mappiness.org.uk Mappiness] === The Visualized Human (or, The Human As Spectacle) === ;Nicholas Felton&nbsp; :[http://feltron.com/ The Annual Felton Report] <youtube>RE4ce4mexrU</youtube> ;Deb Roy&nbsp; :[http://www.youtube.com/watch?v=RE4ce4mexrU&feature=youtu.be The Birth of a Word] ;Johanna Drucker&nbsp; :[http://mit.tv/y7OwFq Humanistic Approaches to the Graphical Expression of Interpretation] == Search Me == === Search-Engine Science === ;Emily H. Chan, Vikram Sahai, Corrie Conrad, and John S. Brownstein&nbsp; :[http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC3104029&tool=pmcentrez Using Web Search Query Data to Monitor Dengue Epidemics: A New Model for Neglected Tropical Disease Surveillance] ;Annie Y.S. Lau, Enrico Coiera, Tatjana Zrimec, and Paul Compton&nbsp; :[http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC2956236&tool=pmcentrez Clinician Search Behaviors May Be Influenced by Search Engine Design] :[https://brandyourself.com/ BrandYourself] === The Science of Control === ;Alession Signorini, Alberto Maria Segre, Philip M. Polgreen&nbsp; :[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0019467 The Use of Twitter to Track Levels of Disease Activity and Public Concern in the U.S. During the Influenza A H1N1 Pandemic] ;David Parry&nbsp; :[http://www.livingbooksaboutlife.org/books/Surveillance ''Surveillance'' ] ;Felix Stalder and Christine Mayer&nbsp; :[http://felix.openflows.com/node/113 The Second Index: Search Engines, Personalization and Surveillance (Deep Search)] === Deep Search === {{#widget:Vimeo|id=13456992}} ;Michael K. Bergman&nbsp; :[http://quod.lib.umich.edu/cgi/t/text/text-idx?c=jep;view=text;rgn=main;idno=3336451.0007.104 The Deep Web: Surfacing Hidden Value] ;Clare Birchall&nbsp; :[http://www.livingbooksaboutlife.org/books/The_in/visible The Invisible Web, ''The In/Visible''] == Media Gifts? == {{#widget:Vimeo|id=8223187}} [http://www.suicidemachine.org/] ;[http://www.suicidemachine.org/ Web 2.0 Suicide Machine] ;[http://transparencygrenade.com/ Transparency Grenade] ;[http://www.freedomboxfoundation.org/ Freedom Box Foundation] ;[http://yacy.net/en/index.html/ YaCy] ;[http://navasse.net/traceblog/about.html Traceblog] ;[http://turbulence.org/Works/JJPS/extension The JJPS Firefox Extension] ;[http://www.weavrs.com/find/ Weavers] ;[http://bengrosser.com/projects/facebook-demetricator/ Facebook Demetricator] ;[http://prisom.me/ #PRISOM] ;[http://givememydata.com/ Give Me My Data] ;[http://commodify.us/ commodify.us] == Appendix == <youtube>ukNkx45Ua0Y</youtube> ;Karl Popper, The Open Society and its Enemies == [http://www.livingbooksaboutlife.org/books/Open_science/Attributions Attributions] == == A 'Frozen' PDF Version of this Living Book == ;[http://livingbooksaboutlife.org/pdfs/bookarchive/DigitizeMe.pdf Download a 'frozen' PDF version of this book as it appeared on 7th October 2011]

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