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Digitize Me, Visualize Me, Search Me: Open Science and its Discontents

edited by Gary Hall


Introduction: White Noise: On the Limits of Openness (Living Book Mix)

One of the aims of the Living Books About Life series is to provide a 'bridge' or point of connection, translation, even interrogation and contestation, between the humanities and the sciences. Accordingly, this introduction to Digitize Me, Visualize Me, Search Me, a book in the series on open science, takes as its starting point the so-called ‘computational turn’ to data-intensive scholarship in the humanities.


The phrase ‘the computational turn’ has been adopted to refer to the process whereby techniques and methodologies drawn from computer science and related fields – including science visualization, interactive information visualization, image processing, network analysis, statistical data analysis, and the management, manipulation and mining of data – are being increasingly used to produce new ways of approaching and understanding texts in the humanities - what is sometimes thought of as 'the digital humanities'. (more...)


Open Science


It’s An Open (Science), Open (Access), Open (Source), Open (Notebook) World

Open Notebook Science


Patrick O. Brown, Michael B. Eisen, Harold Varmus

Why PLoS Became a Publisher


Sally Murray, Stephen Choi, John Hoey, Claire Kendall, James Maskalyk, and Anita Palepu

Open Science, Open Access and Open Source Software at Open Medicine


Community Science

BioCurious: A Community Lab for Biotechnology


Richard Stallman

Free Community Science and the Free Development of Science


‘This Revolution Will Be Digitized’: Online Tools for Open Science

Biogang


Bill Hooker

The Future of Science is Open, Part 3: An Open Science World


Chris Patil and Vivian Siegel

This Revolution Will Be Digitized: Online Tools for Radical Collaboration


Open Science Publishing

Philip E. Bourne

What Do I Want from the Publisher of the Future?


Cameron Neylon

Science in the Open/or/How I Learned to Stop Worrying and Love My Blog


Open Knowledge


Open Access to Knowledge

Open Knowledge Foundation


Gaelle Krikorian and Amy Kapczynski, eds,

Access to Knowledge In the Age of Intellectual Property


New Models for Open Sharing and Open Research
Anne H. Margulies

A New Model for Open Sharing


Thomas B. Kepler, Marc A. Marti-Renom, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd

Open Source Research - The Power of Us


Open Knowledge and its Discontents

J.J. King

The Packet Gang: Openness and its Discontents


Michael Gurstein

Are the Open Data Warriors Fighting for Robin Hood or the Sheriff?: Some Reflections on OKCon 2011 and the Emerging Data Divide


Open Data

Data-Intensive Science
Vincent S. Smith

Data Publication: Towards a Database of Everything


Tony Hey, Stewart Tansley, Kristen Tolle, eds

Scholarly Communication, The Fourth Paradigm: Data-Intensive Scientific Discovery


World of Data

Free Our Data


Simon Rogers

How Canada Became an Open Data and Data Journalism Powerhouse


We Can Know It For You

Omer Tene

What Google Knows: Privacy and Internet Search Engines


Daniel Chandramohan, Kenji Shibuya, Philip Setel, Sandy Cairncross, Alan D. Lopez, Christopher J. L. Murray, Basia Żaba, Robert W. Snow, Fred Binka

Should Data from Demographic Surveillance Systems Be Made More Widely Available to Researchers?


Digitize Me

Encode Me/Decode Me
Human Genome Project


The ENCODE Project Consortium

A User's Guide to the Encyclopaedia of DNA Elements (ENCODE)


deCODEme

Life-Tracking

Quantified Self


Gary Wolf

The Data-Driven Life


Aiden R. Doherty and Alan F. Smeaton

Automatically Augmenting Lifelog Events Using Pervasively Generated Content from Millions of People


Jennifer S. Beaudin, Stephen S. Intille, and Margaret E. Morris

To Track or Not to Track: User Reactions to Concepts in Longitudinal Health Monitoring


The Neurological Turn: or, ‘How the Internet Gets Inside Us’

Adam Gopnik

The Information: How the Internet Gets Inside Us


N. Katherine Hayles

Hyper and Deep Attention: The Generation Divide in Cognitive Modes


Visualize Me


What is Visualization?
Lev Manovich

What is Visualization?


Nathan Yau

Data Visualization Meets Game Design to Explore your Digital Life


Bloom


Mood-mapping

Celeste Biever

Twitter Mood Maps Reveal Emotional States of America


Twitter mood video


Moodscope


Mappiness


The Visualized Human 

Nicholas Felton

The Annual Felton Report


Deb Roy

The Birth of a Word


Johanna Drucker

Humanistic Approaches to the Graphical Expression of Interpretation


Search Me


Search-Engine Science

Emily H. Chan, Vikram Sahai, Corrie Conrad, and John S. Brownstein

Using Web Search Query Data to Monitor Dengue Epidemics: A New Model for Neglected Tropical Disease Surveillance


Annie Y.S. Lau, Enrico Coiera, Tatjana Zrimec, and Paul Compton

Clinician Search Behaviors May Be Influenced by Search Engine Design


The Science of Control

Alession Signorini Alberto Maria Segre, Philip M. Polgreen

The Use of Twitter to Track Levels of Disease Activity and Public Concern in the U.S. During the Influenza A H1N1 Pandemic


David Parry

Surveillance


Felix Stalder and Christine Mayer

The Second Index: Search Engines, Personalization and Surveillance (Deep Search)

Deep Search

Michael K. Bergman

The Deep Web: Surfacing Hidden Value


Clare Birchall

The Invisible Web, The In/Visible


Media Gifts?

Web 2.0 Suicide Machine


Freedom Box Foundation


Traceblog


The JJPS Firefox Extension


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Appendix

Karl Popper, The Open Society and its Enemies



Attributions