Digitize Me, Visualize Me, Search Me: Difference between revisions

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[http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0020047 Free Community Science and the Free Development of Science]  
[http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0020047 Free Community Science and the Free Development of Science]  


This Revolution Will Be Digitized’: Online Tools for Open Science  
=== This Revolution Will Be Digitized’: Online Tools for Open Science ===


[http://biogang.openwetware.org/ Biogang]  
[http://biogang.openwetware.org/ Biogang]  
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== Open Knowledge  ==
== Open Knowledge  ==


=== Open Access to Knowledge ===
=== Open Access to Knowledge ===


[http://okfn.org/ Open Knowledge Foundation]  
[http://okfn.org/ Open Knowledge Foundation]  
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[http://www.soros.org/initiatives/information/focus/access/articles_publications/publications/age-of-intellectual-property-20101110/age-of-intellectual-property-20101110.pdf ''Access to Knowledge In the Age of Intellectual Property'']  
[http://www.soros.org/initiatives/information/focus/access/articles_publications/publications/age-of-intellectual-property-20101110/age-of-intellectual-property-20101110.pdf ''Access to Knowledge In the Age of Intellectual Property'']  


=== New Models for Open Sharing and Open Research ===
=== New Models for Open Sharing and Open Research ===


Anne H. Margulies[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200]  
Anne H. Margulies[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200]  
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[http://www.publish.csiro.au/nid/51/paper/CH06095.htm Open Source Research - The Power of Us]  
[http://www.publish.csiro.au/nid/51/paper/CH06095.htm Open Source Research - The Power of Us]  


=== Open Knowledge and its Discontent ===
=== Open Knowledge and its Discontent ===


J.J. King  
J.J. King  
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== Open Data  ==
== Open Data  ==


=== Data-Intensive Science ===
=== Data-Intensive Science ===


Vincent S. Smith  
Vincent S. Smith  
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[http://www.guardian.co.uk/news/datablog/2010/nov/09/canada-open-data How Canada Became an Open Data and Data Journalism Powerhouse]<br>  
[http://www.guardian.co.uk/news/datablog/2010/nov/09/canada-open-data How Canada Became an Open Data and Data Journalism Powerhouse]<br>  


=== We Can Know It For You ===
=== We Can Know It For You ===


Omer Tene  
Omer Tene  
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== '''Digitize Me'''  ==
== '''Digitize Me'''  ==


=== Encode Me/Decode Me ===
=== Encode Me/Decode Me ===


[http://www.ornl.gov/sci/techresources/Human_Genome/home.shtml Human Genome Project]  
[http://www.ornl.gov/sci/techresources/Human_Genome/home.shtml Human Genome Project]  
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[http://www.decodeme.com/about-decodeme deCODEme]  
[http://www.decodeme.com/about-decodeme deCODEme]  


=== Life-Tracking ===
=== Life-Tracking ===


{{#widget:Vimeo|id=27381297}}  
{{#widget:Vimeo|id=27381297}}  
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<br>  
<br>  


=== The Neurological Turn: or, ‘How the Internet Gets Inside Us' ===
=== The Neurological Turn: or, ‘How the Internet Gets Inside Us' ===


<youtube>NhLnoZFCDBM</youtube>  
<youtube>NhLnoZFCDBM</youtube>  
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== '''Visualize Me'''  ==
== '''Visualize Me'''  ==


=== What is Visualization? ===
=== What is Visualization? ===


Lev Manovich  
Lev Manovich  
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[http://bloom.io/ Bloom]  
[http://bloom.io/ Bloom]  


=== Mood-mapping ===
=== Mood-mapping ===


Celeste Biever  
Celeste Biever  
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[http://www.mappiness.org.uk Mappiness]  
[http://www.mappiness.org.uk Mappiness]  


=== The Visualized Human ===
=== The Visualized Human ===


Nicholas Felton  
Nicholas Felton  
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== Search Me  ==
== Search Me  ==


=== Search-Engine Science ===
=== Search-Engine Science ===


Emily H. Chan, Vikram Sahai, Corrie Conrad, and John S. Brownstein  
Emily H. Chan, Vikram Sahai, Corrie Conrad, and John S. Brownstein  
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[http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC2956236&tool=pmcentrez Clinician Search Behaviors May Be Influenced by Search Engine Design]  
[http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC2956236&tool=pmcentrez Clinician Search Behaviors May Be Influenced by Search Engine Design]  


=== The Science of Control ===
=== The Science of Control ===


Alession Signorini Alberto Maria Segre, Philip M. Polgreen  
Alession Signorini Alberto Maria Segre, Philip M. Polgreen  
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[http://felix.openflows.com/node/113 The Second Index: Search Engines, Personalization and Surveillance (Deep Search)]  
[http://felix.openflows.com/node/113 The Second Index: Search Engines, Personalization and Surveillance (Deep Search)]  


=== Deep Search ===
=== Deep Search ===


{{#widget:Vimeo|id=13456992}} Michael K. Bergman  
{{#widget:Vimeo|id=13456992}} Michael K. Bergman  
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[http://www.livingbooksaboutlife.org/books/The_in/visible The Invisible Web, ''The In/Visible'']  
[http://www.livingbooksaboutlife.org/books/The_in/visible The Invisible Web, ''The In/Visible'']  


== Media Gifts? ==
== Media Gifts? ==


{{#widget:Vimeo|id=8223187}} [http://www.suicidemachine.org/ Web 2.0 Suicide Machine]  
{{#widget:Vimeo|id=8223187}} [http://www.suicidemachine.org/ Web 2.0 Suicide Machine]  

Revision as of 14:50, 29 September 2011

LifetrackingCover1.jpg
LifetrackingCover1.jpg

Open Science and its Discontents edited by Gary Hall

Introduction: White Noise: On the Limits of Openness (Living Book Mix)

One of the aims of the Living Books About Life series is to provide a 'bridge' or point of connection, translation, even interrogation and contestation, between the humanities and the sciences. Accordingly, this introduction to Digitize Me, Visualize Me, Search Me, a book in the series on open science, takes as its starting point the so-called ‘computational turn’ to data-intensive scholarship in the humanities.

The phrase ‘the computational turn’ has been adopted to refer to the process whereby techniques and methodologies drawn from computer science and related fields – including science visualization, interactive information visualization, image processing, network analysis, statistical data analysis, and the management, manipulation and mining of data – are being increasingly used to produce new ways of approaching and understanding texts in the humanities - what is sometimes thought of as 'the digital humanities'. (more...)

Open Science

It’s An Open (Science), Open (Access), Open (Source), Open (Notebook) World

Open Notebook Science

Patrick O. Brown, Michael B. Eisen, Harold Varmus

Why PLoS Became a Publisher

Sally Murray, Stephen Choi, John Hoey, Claire Kendall, James Maskalyk, and Anita Palepu

Open Science, Open Access and Open Source Software at Open Medicine

Community Science

BioCurious: A Community Lab for Biotechnology

Richard Stallman

Free Community Science and the Free Development of Science

This Revolution Will Be Digitized’: Online Tools for Open Science

Biogang

Bill Hooker

The Future of Science is Open, Part 3: An Open Science World

Chris Patil and Vivian Siegel

This Revolution Will Be Digitized: Online Tools for Radical Collaboration

Open Science Publishing

Philip E. Bourne

What Do I Want from the Publisher of the Future?

Cameron Neylon

Science in the Open/or/How I Learned to Stop Worrying and Love My Blog

Open Knowledge

Open Access to Knowledge

Open Knowledge Foundation

Gaelle Krikorian and Amy Kapczynski, eds,

Access to Knowledge In the Age of Intellectual Property

New Models for Open Sharing and Open Research

Anne H. Margulies[1]

A New Model for Open Sharing

Thomas B. Kepler, Marc A. Marti-Renom, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd

Open Source Research - The Power of Us

Open Knowledge and its Discontent

J.J. King

The Packet Gang: Openness and its Discontents

Michael Gurstein

Are the Open Data Warriors Fighting for Robin Hood or the Sheriff?: Some Reflections on OKCon 2011 and the Emerging Data Divide

Open Data

Data-Intensive Science

Vincent S. Smith

Data Publication: Towards a Database of Everything

Tony Hey, Stewart Tansley, Kristen Tolle, eds

Scholarly Communication, The Fourth Paradigm: Data-Intensive Scientific Discovery

World of Data

Free Our Data

Simon Rogers

How Canada Became an Open Data and Data Journalism Powerhouse

We Can Know It For You

Omer Tene

What Google Knows: Privacy and Internet Search Engines

Daniel Chandramohan, Kenji Shibuya, Philip Setel, Sandy Cairncross, Alan D. Lopez, Christopher J. L. Murray, Basia Żaba, Robert W. Snow, Fred Binka

Should Data from Demographic Surveillance Systems Be Made More Widely Available to Researchers?

Digitize Me

Encode Me/Decode Me

Human Genome Project

The ENCODE Project Consortium

A User's Guide to the Encyclopaedia of DNA Elements (ENCODE)

deCODEme

Life-Tracking

Quantified Self

Gary Wolf

The Data-Driven Life

Aiden R. Doherty and Alan F. Smeaton

Automatically Augmenting Lifelog Events Using Pervasively Generated Content from Millions of People

Jennifer S. Beaudin, Stephen S. Intille, and Margaret E. Morris

To Track or Not to Track: User Reactions to Concepts in Longitudinal Health Monitoring


The Neurological Turn: or, ‘How the Internet Gets Inside Us'

Adam Gopnik

The Information: How the Internet Gets Inside Us

N. Katherine Hayles

Hyper and Deep Attention: The Generation Divide in Cognitive Modes

Visualize Me

What is Visualization?

Lev Manovich

What is Visualization?

Nathan Yau

Data Visualization Meets Game Design to Explore your Digital Life

Bloom

Mood-mapping

Celeste Biever

Twitter Mood Maps Reveal Emotional States of America

Twitter mood video Moodscope

Mappiness

The Visualized Human

Nicholas Felton

The Annual Felton Report Deb Roy

The Birth of a Word Johanna Drucker

Humanistic Approaches to the Graphical Expression of Interpretation

Search Me

Search-Engine Science

Emily H. Chan, Vikram Sahai, Corrie Conrad, and John S. Brownstein

Using Web Search Query Data to Monitor Dengue Epidemics: A New Model for Neglected Tropical Disease Surveillance

Annie Y.S. Lau, Enrico Coiera, Tatjana Zrimec, and Paul Compton

Clinician Search Behaviors May Be Influenced by Search Engine Design

The Science of Control

Alession Signorini Alberto Maria Segre, Philip M. Polgreen

The Use of Twitter to Track Levels of Disease Activity and Public Concern in the U.S. During the Influenza A H1N1 Pandemic

David Parry

Surveillance

Felix Stalder and Christine Mayer

The Second Index: Search Engines, Personalization and Surveillance (Deep Search)

Deep Search

Michael K. Bergman

The Deep Web: Surfacing Hidden Value

Clare Birchall

The Invisible Web, The In/Visible

Media Gifts?

Web 2.0 Suicide Machine

Freedom Box Foundation

Traceblog

The JJPS Firefox Extension

Appendix

Karl Popper, The Open Society and its Enemies

Attributions