54 Articles
Living Books About Life

Digitize Me, Visualize Me, Search Me: Difference between revisions

No edit summary
No edit summary
Line 1: Line 1:
[[Image:LifetrackingCover1.jpg|right|318x450px|LifetrackingCover1.jpg]]
<p><img src="/wiki/images/thumb/LifetrackingCover1.jpg/318px-LifetrackingCover1.jpg" _fck_mw_filename="LifetrackingCover1.jpg" _fck_mw_location="right" _fck_mw_width="318" _fck_mw_height="450" alt="LifetrackingCover1.jpg" class="fck_mw_right" />
 
</p>
= '''Digitize Me, Visualize Me, Search Me: Open Science and its Discontents'''<br>  =
<h1> <b>Digitize Me, Visualize Me, Search Me: Open Science and its Discontents</b><br />  </h1>
 
<h1> edited by Gary Hall<br />  </h1>
= edited by Gary Hall<br>  =
<p>__TOC__<b><br /></b>  
 
</p>
__TOC__'''<br>'''
<h2> <b>Introduction: White Noise (coming soon...)</b><br />  </h2>
 
<p><br />  
== '''Introduction: White Noise (coming soon...)'''<br>  ==
</p>
 
<h2> <b>Open Science</b> </h2>
<br>  
<p><br />  
 
</p><p><b>It’s An Open (Science), Open (Access), Open (Source), Open (Notebook) World</b><br />  
== '''Open Science''' ==
</p><p><a href="http://usefulchem.wikispaces.com/">Open Notebook Science </a>
 
</p><p>Patrick O. Brown, Michael B. Eisen, Harold Varmus  
<br>  
</p><p><a href="http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0000036">Why PLoS Became a Publisher</a><br />  
 
</p><p>Sally Murray, Stephen Choi, John Hoey, Claire Kendall, James Maskalyk, and Anita Palepu<br />  
'''It’s An Open (Science), Open (Access), Open (Source), Open (Notebook) World'''<br>  
</p><p><a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091592/pdf/OpenMed-02-e1.pdf??tool=pmcentrez">Open Science, Open Access and Open Source Software at <i>Open Medicine</i></a><br />  
 
</p><p><br />  
[http://usefulchem.wikispaces.com/ Open Notebook Science ]
</p><p><b>Community Science</b>
 
</p><p><a href="http://www.psfk.com/2010/09/biocurious-a-community-lab-for-biotechnology.html">BioCurious: A Community Lab for Biotechnology</a>
Patrick O. Brown, Michael B. Eisen, Harold Varmus  
</p><p>Richard Stallman  
 
</p><p><a href="http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0020047">Free Community Science and the Free Development of Science</a><br />  
[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0000036 Why PLoS Became a Publisher]<br>  
</p><p><br />  
 
</p><p><b>‘This Revolution Will Be Digitized’: Online Tools for Open Science </b><br />  
Sally Murray, Stephen Choi, John Hoey, Claire Kendall, James Maskalyk, and Anita Palepu<br>  
</p><p><a href="http://biogang.openwetware.org/">Biogang</a>
 
</p><p>Bill Hooker<br />  
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091592/pdf/OpenMed-02-e1.pdf??tool=pmcentrez Open Science, Open Access and Open Source Software at ''Open Medicine'']<br>  
</p><p><a href="http://3quarksdaily.blogs.com/3quarksdaily/2007/01/the_future_of_s.html">The Future of Science is Open, Part 3: An Open Science World</a><br />  
 
</p><p>Chris Patil and Vivian Siegel<br />  
<br>  
</p><p><a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2675795/">This Revolution Will Be Digitized: Online Tools for Radical Collaboration</a><br />  
 
</p><p><br />  
'''Community Science'''
</p><p><b>Open Science Publishing</b>
 
</p><p>Philip E. Bourne  
[http://www.psfk.com/2010/09/biocurious-a-community-lab-for-biotechnology.html BioCurious: A Community Lab for Biotechnology]
</p><p><a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877727/?tool=pmcentrez#pcbi.1000787-Hey1">What Do I Want from the Publisher of the Future?</a><br />  
 
</p><p>Cameron Neylon<br />
Richard Stallman  
</p><p><a href="http://pirsa.org/08090038/">Science in the Open/or/How I Learned to Stop Worrying and Love My Blog</a>
 
</p><p><br />  
[http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0020047 Free Community Science and the Free Development of Science]<br>  
</p>
 
<h2> <b>Open Knowledge</b><br />  </h2>
<br>  
<p><br />  
 
</p><p><b>Open Access to Knowledge</b><br />  
'''‘This Revolution Will Be Digitized’: Online Tools for Open Science '''<br>  
</p><p>Gaelle Krikorian and Amy Kapczynski, eds, <br />  
 
</p><p><a href="http://www.soros.org/initiatives/information/focus/access/articles_publications/publications/age-of-intellectual-property-20101110/age-of-intellectual-property-20101110.pdf"><i>Access to Knowledge In the Age of Intellectual Property</i></a><br />  
[http://biogang.openwetware.org/ Biogang]
</p><p><a href="http://okfn.org/">Open Knowledge Foundation</a><br />  
 
</p><p><br />  
Bill Hooker<br>  
</p><p><b>New Models for Open Sharing and Open Research</b><br />Anne H. Margulies<a href="http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200"><br /></a>  
 
</p><p><a href="http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200">A New Model for Open Sharing</a><br />  
[http://3quarksdaily.blogs.com/3quarksdaily/2007/01/the_future_of_s.html The Future of Science is Open, Part 3: An Open Science World]<br>  
</p><p>Thomas B. Kepler, Marc A. Marti-Renom, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd<br />  
 
</p><p><a href="http://www.publish.csiro.au/nid/51/paper/CH06095.htm">Open Source Research - The Power of Us</a><br />  
Chris Patil and Vivian Siegel<br>  
</p><p><br />  
 
</p><p><b>Open Knowledge and its Discontents</b>
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2675795/ This Revolution Will Be Digitized: Online Tools for Radical Collaboration]<br>  
</p><p>JJ King<br />  
 
</p><p><a href="http://www.metamute.org/proudtobeflesh">The Packet Gang: Openness and its Discontents</a><br />  
<br>  
</p><p>Michael Gurstein  
 
</p><p><a href="http://gurstein.wordpress.com/2011/07/03/are-the-open-data-warriors-fighting-for-robin-hood-or-the-sheriff-some-reflections-on-okcon-2011-and-the-emerging-data-divide/">Are the Open Data Warriors Fighting for Robin Hood or the Sheriff?: Some Reflections on OKCon 2011 and the Emerging Data Divide</a>
'''Open Science Publishing'''
</p><p><br />  
 
</p>
Philip E. Bourne  
<h2> <b>Open Data</b> </h2>
 
<p><b>Data-Intensive Science</b><br />Vincent S. Smith<br />  
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877727/?tool=pmcentrez#pcbi.1000787-Hey1 What Do I Want from the Publisher of the Future?]<br>  
</p><p><a href="http://www.biomedcentral.com/1756-0500/2/113">Data Publication: Towards a Database of Everything</a><br />  
 
</p><p>Tony Hey, Stewart Tansley, Kristen Tolle, eds<br />  
Cameron Neylon<br>  
</p><p><a href="http://research.microsoft.com/en-us/collaboration/fourthparadigm/4th_paradigm_book_part4_complete.pdf">Scholarly Communication, <i>The Fourth Paradigm: Data-Intensive Scientific Discovery</i></a><br />  
 
</p><p><br />  
[http://pirsa.org/08090038/ Science in the Open/or/How I Learned to Stop Worrying and Love My Blog]
</p><p><b>World of Data</b><br />  
 
</p><p><a href="http://www.freeourdata.org.uk/">Free Our Data</a><br />  
<br>  
</p><p>Simon Rogers<br />  
 
</p><p><a href="http://www.guardian.co.uk/news/datablog/2010/nov/09/canada-open-data">How Canada Became an Open Data and Data Journalism Powerhouse</a><br />  
== '''Open Knowledge'''<br>  ==
</p><p><br /> <b>&nbsp;We Can Know It For You</b>
 
</p><p>Daniel Chandramohan, Kenji Shibuya, Philip Setel, Sandy Cairncross, Alan D. Lopez, Christopher J. L. Murray, Basia Żaba, Robert W. Snow, Fred Binka  
<br>  
</p><p><a href="http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0050057">Should Data from Demographic Surveillance Systems Be Made More Widely Available to Researchers?</a><br />  
 
</p><p>Gary Hall<br />  
'''Open Access to Knowledge'''<br>  
</p><p><a href="http://scm-rime.tees.ac.uk/VLE/DATA/CSEARCH/MODULES/CS/2010/05/0757/_.doc">We Can Know It For You: The Secret Life of Metadata</a><br />  
 
</p><p><br />
Gaelle Krikorian and Amy Kapczynski, eds, <br>  
</p>
 
<h2> <b>Digitize Me</b> </h2>
[http://www.soros.org/initiatives/information/focus/access/articles_publications/publications/age-of-intellectual-property-20101110/age-of-intellectual-property-20101110.pdf ''Access to Knowledge In the Age of Intellectual Property'']<br>  
<p><b>Encode Me/Decode Me</b><br /><a href="http://www.ornl.gov/sci/techresources/Human_Genome/home.shtml">Human Genome Project</a><br />  
 
</p><p>The ENCODE Project Consortium  
[http://okfn.org/ Open Knowledge Foundation]<br>  
</p><p><a href="http://pubmedcentralcanada.ca/picrender.cgi?accid=PMC3079585&amp;blobtype=pdf&amp;tool=pmcentrez">A User's Guide to the Encyclopaedia of DNA Elements (ENCODE) </a><br />  
 
</p><p><a href="http://www.decodeme.com/about-decodeme">deCODEme</a><br /><br />  
<br>  
</p><p><b>Life-Tracking</b><br /><a href="http://quantifiedself.com">Quantified Self</a>
 
</p><p>Gary Wolf<br />  
'''New Models for Open Sharing and Open Research'''<br>Anne H. Margulies[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200 <br>]
</p><p><a href="http://xrl.us/bh3d4g">The Data-Driven Life</a><br />  
 
</p><p>Aiden R. Doherty and Alan F. Smeaton<br />  
[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200 A New Model for Open Sharing]<br>  
</p><p><a href="http://doras.dcu.ie/15300/1/Sensors-03-154-Doherty-ie-edited.pdf">Automatically Augmenting Lifelog Events Using Pervasively Generated Content from Millions of People<br /></a>Jennifer S. Beaudin, Stephen S. Intille, and Margaret E. Morris  
 
</p><p><a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794006/?tool=pmcentrez#ref1">To Track or Not to Track: User Reactions to Concepts in Longitudinal Health Monitoring</a><br />  
Thomas B. Kepler, Marc A. Marti-Renom, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd<br>  
</p><p><br />
 
</p><p><b>The Neurological Turn: or, ‘How the Internet Gets Inside Us’</b>
[http://www.publish.csiro.au/nid/51/paper/CH06095.htm Open Source Research - The Power of Us]<br>  
</p><p><span class="fck_mw_special" _fck_mw_customtag="true" _fck_mw_tagname="youtube">NhLnoZFCDBM</span>  
 
</p><p>N. Katherine Hayles<br />  
<br>  
</p><p><a href="http://www.sciy.org/2010/11/24/hyper-and-deep-attention-the-generational-divide-in-cognitive-modes-by-n-katherine-hayles/">Hyper and Deep Attention: The Generation Divide in Cognitive Modes</a><br />  
 
</p><p>Adam Gopnik<br />  
'''Open Knowledge and its Discontents'''
</p><p><a href="http://www.newyorker.com/arts/critics/atlarge/2011/02/14/110214crat_atlarge_gopnik">The Information: How the Internet Gets Inside Us</a><br />  
 
</p><p><br />  
JJ King<br>  
</p>
 
<h2> <b>Visualize Me</b> </h2>
[http://www.metamute.org/proudtobeflesh The Packet Gang: Openness and its Discontents]<br>  
<p><br />  
 
</p><p><b>What is Visualization?</b><br />Lev Manovich<br />  
Michael Gurstein  
</p><p>What is Visualization?<br />  
 
</p><p>Nathan Yau<br />  
[http://gurstein.wordpress.com/2011/07/03/are-the-open-data-warriors-fighting-for-robin-hood-or-the-sheriff-some-reflections-on-okcon-2011-and-the-emerging-data-divide/ Are the Open Data Warriors Fighting for Robin Hood or the Sheriff?: Some Reflections on OKCon 2011 and the Emerging Data Divide]
</p><p><a href="http://flowingdata.com/2011/02/23/data-visualization-meets-game-design-to-explore-your-digital-life/">Data Visualization Meets Game Design to Explore your Digital Life</a><br />  
 
</p><p><a href="http://bloom.io/">Bloom</a><br />  
<br>  
</p><p><br />
 
</p><p><b>Mood-mapping</b>
== '''Open Data''' ==
</p><p>Celeste Biever <br />  
 
</p><p><a href="http://www.newscientist.com/article/dn19200-twitter-mood-maps-reveal-emotional-states-of-america.html">Twitter Mood Maps Reveal Emotional States of America</a><br />  
'''Data-Intensive Science'''<br>Vincent S. Smith<br>  
</p><p><a href="http://www.newscientist.com/articlevideo/dn19200/221111468001-twitter-mood-maps-reveal-emotional-states-of-america.html">Twitter mood video</a><br />  
 
</p><p><span class="fck_mw_special" _fck_mw_customtag="true" _fck_mw_tagname="youtube">ZglPWYb8X2o</span>  
[http://www.biomedcentral.com/1756-0500/2/113 Data Publication: Towards a Database of Everything]<br>  
</p><p><a href="http://www.moodscope.com/">Moodscope</a><br />  
 
</p><p><a href="http://www.mappiness.org.uk">Mappiness</a><br />  
Tony Hey, Stewart Tansley, Kristen Tolle, eds<br>  
</p><p><br />  
 
</p><p><b>The Visualized Human&nbsp;</b>
[http://research.microsoft.com/en-us/collaboration/fourthparadigm/4th_paradigm_book_part4_complete.pdf Scholarly Communication, ''The Fourth Paradigm: Data-Intensive Scientific Discovery'']<br>  
</p><p>Nicholas Felton  
 
</p><p><a href="http://feltron.com/">The Annual Felton Report</a><br />  
<br>  
</p><p>Anya Kamenetz  
 
</p><p><a href="http://www.fastcompany.com/1733627/mit-scientist-captures-his-sons-first-90000-hours-on-video">MIT Scientist Captures 90,000 Hours of Video of His Son’s First Words, Graphs It</a>
'''World of Data'''<br>  
</p><p>Johanna Drucker  
 
</p><p><a href="http://mitworld.mit.edu/video/796">Humanistic Approaches to the Graphical Expression of Interpretation</a><br />  
[http://www.freeourdata.org.uk/ Free Our Data]<br>  
</p><p><br />  
 
</p>
Simon Rogers<br>  
<h2> <b>Search Me</b> </h2>
 
<p><br />  
[http://www.guardian.co.uk/news/datablog/2010/nov/09/canada-open-data How Canada Became an Open Data and Data Journalism Powerhouse]<br>  
</p><p><b>Search-Engine Science</b>
 
</p><p>Emily H. Chan, Vikram Sahai, Corrie Conrad, and John S. Brownstein  
<br> '''&nbsp;We Can Know It For You'''
</p><p><a href="http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC3104029&amp;tool=pmcentrez">Using Web Search Query Data to Monitor Dengue Epidemics: A New Model for Neglected Tropical Disease Surveillance</a>
 
</p><p>Annie Y.S. Lau, Enrico Coiera, Tatjana Zrimec, and Paul Compton  
Daniel Chandramohan, Kenji Shibuya, Philip Setel, Sandy Cairncross, Alan D. Lopez, Christopher J. L. Murray, Basia Żaba, Robert W. Snow, Fred Binka  
</p><p><a href="http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC2956236&amp;tool=pmcentrez">Clinician Search Behaviors May Be Influenced by Search Engine Design</a><br />  
 
</p><p><br />  
[http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0050057 Should Data from Demographic Surveillance Systems Be Made More Widely Available to Researchers?]<br>  
</p><p><b>The Science of Control</b><br />  
 
</p><p>Alession Signorini Alberto Maria Segre, Philip M. Polgreen  
Gary Hall<br>  
</p><p><a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0019467">The Use of Twitter to Track Levels of Disease Activity and Public Concern in the U.S. During the Influenza A H1N1 Pandemic</a><br />  
 
</p><p>David Parry  
[http://scm-rime.tees.ac.uk/VLE/DATA/CSEARCH/MODULES/CS/2010/05/0757/_.doc We Can Know It For You: The Secret Life of Metadata]<br>  
</p><p><a href="http://www.livingbooksaboutlife.org/books/Surveillance">Surveilling Health, <i>Surveillance</i> </a><br />  
 
</p><p>Felix Stalder and Christine Mayer<br />  
<br>  
</p><p><a href="http://felix.openflows.com/node/113">The Second Index: Search Engines, Personalization and Surveillance (Deep Search)</a><br /><br />  
 
</p><p><b>Deep Search</b>  
== '''Digitize Me''' ==
</p><p>Michael K. Bergman<br />
 
</p><p><a href="http://quod.lib.umich.edu/cgi/t/text/text-idx?c=jep;view=text;rgn=main;idno=3336451.0007.104">The Deep Web: Surfacing Hidden Value</a>
'''Encode Me/Decode Me'''<br>[http://www.ornl.gov/sci/techresources/Human_Genome/home.shtml Human Genome Project]<br>  
</p><p>Clare Birchall<br />  
 
</p><p>The Invisible Web, <a href="http://www.livingbooksaboutlife.org/books/The_in/visible"><i>The In/Visible</i></a>
The ENCODE Project Consortium  
</p><p><br /> <b>White Noise</b>
 
</p><p><a href="http://www.suicidemachine.org/">Web 2.0 Suicide Machine</a>
[http://pubmedcentralcanada.ca/picrender.cgi?accid=PMC3079585&blobtype=pdf&tool=pmcentrez A User's Guide to the Encyclopaedia of DNA Elements (ENCODE) ]<br>  
</p><p><a href="http://www.freedomboxfoundation.org/">Freedom Box Foundation</a>
 
</p><p><a href="http://navasse.net/traceblog/about.html">Traceblog</a>
[http://www.decodeme.com/about-decodeme deCODEme]<br><br>  
</p><p><a href="http://turbulence.org/Works/JJPS/extension">The JJPS Firefox Extension</a>
 
</p><p><br />  
'''Life-Tracking'''<br>[http://quantifiedself.com Quantified Self]
</p>
 
<pre class="_fck_mw_lspace">==
Gary Wolf<br>  
</pre>
 
<h2> <b>Appendix</b> </h2>
[http://xrl.us/bh3d4g The Data-Driven Life]<br>  
<p><br />Karl Popper, The Open Society and its Enemies <br />
 
</p><p><span class="fck_mw_special" _fck_mw_customtag="true" _fck_mw_tagname="youtube">ukNkx45Ua0Y</span>
Aiden R. Doherty and Alan F. Smeaton<br>  
</p><p><br />
 
</p><p><br />  
[http://doras.dcu.ie/15300/1/Sensors-03-154-Doherty-ie-edited.pdf Automatically Augmenting Lifelog Events Using Pervasively Generated Content from Millions of People<br>]Jennifer S. Beaudin, Stephen S. Intille, and Margaret E. Morris  
</p><p><br /><br />
 
</p>
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794006/?tool=pmcentrez#ref1 To Track or Not to Track: User Reactions to Concepts in Longitudinal Health Monitoring]<br>  
 
<br>  
 
'''The Neurological Turn: or, ‘How the Internet Gets Inside Us’'''
 
<youtube>NhLnoZFCDBM</youtube>  
 
N. Katherine Hayles<br>  
 
[http://www.sciy.org/2010/11/24/hyper-and-deep-attention-the-generational-divide-in-cognitive-modes-by-n-katherine-hayles/ Hyper and Deep Attention: The Generation Divide in Cognitive Modes]<br>  
 
Adam Gopnik<br>  
 
[http://www.newyorker.com/arts/critics/atlarge/2011/02/14/110214crat_atlarge_gopnik The Information: How the Internet Gets Inside Us]<br>  
 
<br>  
 
== '''Visualize Me''' ==
 
<br>  
 
'''What is Visualization?'''<br>Lev Manovich<br>  
 
What is Visualization?<br>  
 
Nathan Yau<br>  
 
[http://flowingdata.com/2011/02/23/data-visualization-meets-game-design-to-explore-your-digital-life/ Data Visualization Meets Game Design to Explore your Digital Life]<br>  
 
[http://bloom.io/ Bloom]<br>  
 
<br>  
 
'''Mood-mapping'''
 
Celeste Biever <br>  
 
[http://www.newscientist.com/article/dn19200-twitter-mood-maps-reveal-emotional-states-of-america.html Twitter Mood Maps Reveal Emotional States of America]<br>  
 
[http://www.newscientist.com/articlevideo/dn19200/221111468001-twitter-mood-maps-reveal-emotional-states-of-america.html Twitter mood video]<br>  
 
<youtube>ZglPWYb8X2o</youtube>  
 
[http://www.moodscope.com/ Moodscope]<br>  
 
[http://www.mappiness.org.uk Mappiness]<br>  
 
<br>  
 
'''The Visualized Human&nbsp;'''
 
Nicholas Felton  
 
[http://feltron.com/ The Annual Felton Report]<br>  
 
Anya Kamenetz  
 
[http://www.fastcompany.com/1733627/mit-scientist-captures-his-sons-first-90000-hours-on-video MIT Scientist Captures 90,000 Hours of Video of His Son’s First Words, Graphs It]
 
Johanna Drucker  
 
[http://mitworld.mit.edu/video/796 Humanistic Approaches to the Graphical Expression of Interpretation]<br>  
 
<br>  
 
== '''Search Me''' ==
 
<br>  
 
'''Search-Engine Science'''
 
Emily H. Chan, Vikram Sahai, Corrie Conrad, and John S. Brownstein  
 
[http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC3104029&tool=pmcentrez Using Web Search Query Data to Monitor Dengue Epidemics: A New Model for Neglected Tropical Disease Surveillance]
 
Annie Y.S. Lau, Enrico Coiera, Tatjana Zrimec, and Paul Compton  
 
[http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC2956236&tool=pmcentrez Clinician Search Behaviors May Be Influenced by Search Engine Design]<br>  
 
<br>  
 
'''The Science of Control'''<br>  
 
Alession Signorini Alberto Maria Segre, Philip M. Polgreen  
 
[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0019467 The Use of Twitter to Track Levels of Disease Activity and Public Concern in the U.S. During the Influenza A H1N1 Pandemic]<br>  
 
David Parry  
 
[http://www.livingbooksaboutlife.org/books/Surveillance Surveilling Health, ''Surveillance'' ]<br>  
 
Felix Stalder and Christine Mayer<br>  
 
[http://felix.openflows.com/node/113 The Second Index: Search Engines, Personalization and Surveillance (Deep Search)]<br><br>  
 
'''Deep Search'''
 
Michael K. Bergman<br>  
 
[http://quod.lib.umich.edu/cgi/t/text/text-idx?c=jep;view=text;rgn=main;idno=3336451.0007.104 The Deep Web: Surfacing Hidden Value]
 
Clare Birchall<br>  
 
The Invisible Web, [http://www.livingbooksaboutlife.org/books/The_in/visible ''The In/Visible'']
 
<br> '''White Noise'''
 
[http://www.suicidemachine.org/ Web 2.0 Suicide Machine]
 
[http://www.freedomboxfoundation.org/ Freedom Box Foundation]
 
[http://navasse.net/traceblog/about.html Traceblog]
 
[http://turbulence.org/Works/JJPS/extension The JJPS Firefox Extension]
 
<br>  
 
==
 
== '''Appendix''' ==
 
<br>Karl Popper, The Open Society and its Enemies <br>
 
<youtube>ukNkx45Ua0Y</youtube>
 
 
 
<br>  
 
<br><br>

Revision as of 15:11, 19 August 2011

<img src="/wiki/images/thumb/LifetrackingCover1.jpg/318px-LifetrackingCover1.jpg" _fck_mw_filename="LifetrackingCover1.jpg" _fck_mw_location="right" _fck_mw_width="318" _fck_mw_height="450" alt="LifetrackingCover1.jpg" class="fck_mw_right" />

Digitize Me, Visualize Me, Search Me: Open Science and its Discontents

edited by Gary Hall

Introduction: White Noise (coming soon...)


Open Science


It’s An Open (Science), Open (Access), Open (Source), Open (Notebook) World

<a href="http://usefulchem.wikispaces.com/">Open Notebook Science </a>

Patrick O. Brown, Michael B. Eisen, Harold Varmus

<a href="http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0000036">Why PLoS Became a Publisher</a>

Sally Murray, Stephen Choi, John Hoey, Claire Kendall, James Maskalyk, and Anita Palepu

<a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091592/pdf/OpenMed-02-e1.pdf??tool=pmcentrez">Open Science, Open Access and Open Source Software at Open Medicine</a>


Community Science

<a href="http://www.psfk.com/2010/09/biocurious-a-community-lab-for-biotechnology.html">BioCurious: A Community Lab for Biotechnology</a>

Richard Stallman

<a href="http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0020047">Free Community Science and the Free Development of Science</a>


‘This Revolution Will Be Digitized’: Online Tools for Open Science

<a href="http://biogang.openwetware.org/">Biogang</a>

Bill Hooker

<a href="http://3quarksdaily.blogs.com/3quarksdaily/2007/01/the_future_of_s.html">The Future of Science is Open, Part 3: An Open Science World</a>

Chris Patil and Vivian Siegel

<a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2675795/">This Revolution Will Be Digitized: Online Tools for Radical Collaboration</a>


Open Science Publishing

Philip E. Bourne

<a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877727/?tool=pmcentrez#pcbi.1000787-Hey1">What Do I Want from the Publisher of the Future?</a>

Cameron Neylon

<a href="http://pirsa.org/08090038/">Science in the Open/or/How I Learned to Stop Worrying and Love My Blog</a>


Open Knowledge


Open Access to Knowledge

Gaelle Krikorian and Amy Kapczynski, eds,

<a href="http://www.soros.org/initiatives/information/focus/access/articles_publications/publications/age-of-intellectual-property-20101110/age-of-intellectual-property-20101110.pdf">Access to Knowledge In the Age of Intellectual Property</a>

<a href="http://okfn.org/">Open Knowledge Foundation</a>


New Models for Open Sharing and Open Research
Anne H. Margulies<a href="http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200">
</a>

<a href="http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200">A New Model for Open Sharing</a>

Thomas B. Kepler, Marc A. Marti-Renom, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd

<a href="http://www.publish.csiro.au/nid/51/paper/CH06095.htm">Open Source Research - The Power of Us</a>


Open Knowledge and its Discontents

JJ King

<a href="http://www.metamute.org/proudtobeflesh">The Packet Gang: Openness and its Discontents</a>

Michael Gurstein

<a href="http://gurstein.wordpress.com/2011/07/03/are-the-open-data-warriors-fighting-for-robin-hood-or-the-sheriff-some-reflections-on-okcon-2011-and-the-emerging-data-divide/">Are the Open Data Warriors Fighting for Robin Hood or the Sheriff?: Some Reflections on OKCon 2011 and the Emerging Data Divide</a>


Open Data

Data-Intensive Science
Vincent S. Smith

<a href="http://www.biomedcentral.com/1756-0500/2/113">Data Publication: Towards a Database of Everything</a>

Tony Hey, Stewart Tansley, Kristen Tolle, eds

<a href="http://research.microsoft.com/en-us/collaboration/fourthparadigm/4th_paradigm_book_part4_complete.pdf">Scholarly Communication, The Fourth Paradigm: Data-Intensive Scientific Discovery</a>


World of Data

<a href="http://www.freeourdata.org.uk/">Free Our Data</a>

Simon Rogers

<a href="http://www.guardian.co.uk/news/datablog/2010/nov/09/canada-open-data">How Canada Became an Open Data and Data Journalism Powerhouse</a>


 We Can Know It For You

Daniel Chandramohan, Kenji Shibuya, Philip Setel, Sandy Cairncross, Alan D. Lopez, Christopher J. L. Murray, Basia Żaba, Robert W. Snow, Fred Binka

<a href="http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0050057">Should Data from Demographic Surveillance Systems Be Made More Widely Available to Researchers?</a>

Gary Hall

<a href="http://scm-rime.tees.ac.uk/VLE/DATA/CSEARCH/MODULES/CS/2010/05/0757/_.doc">We Can Know It For You: The Secret Life of Metadata</a>


Digitize Me

Encode Me/Decode Me
<a href="http://www.ornl.gov/sci/techresources/Human_Genome/home.shtml">Human Genome Project</a>

The ENCODE Project Consortium

<a href="http://pubmedcentralcanada.ca/picrender.cgi?accid=PMC3079585&blobtype=pdf&tool=pmcentrez">A User's Guide to the Encyclopaedia of DNA Elements (ENCODE) </a>

<a href="http://www.decodeme.com/about-decodeme">deCODEme</a>

Life-Tracking
<a href="http://quantifiedself.com">Quantified Self</a>

Gary Wolf

<a href="http://xrl.us/bh3d4g">The Data-Driven Life</a>

Aiden R. Doherty and Alan F. Smeaton

<a href="http://doras.dcu.ie/15300/1/Sensors-03-154-Doherty-ie-edited.pdf">Automatically Augmenting Lifelog Events Using Pervasively Generated Content from Millions of People
</a>Jennifer S. Beaudin, Stephen S. Intille, and Margaret E. Morris

<a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794006/?tool=pmcentrez#ref1">To Track or Not to Track: User Reactions to Concepts in Longitudinal Health Monitoring</a>


The Neurological Turn: or, ‘How the Internet Gets Inside Us’

NhLnoZFCDBM

N. Katherine Hayles

<a href="http://www.sciy.org/2010/11/24/hyper-and-deep-attention-the-generational-divide-in-cognitive-modes-by-n-katherine-hayles/">Hyper and Deep Attention: The Generation Divide in Cognitive Modes</a>

Adam Gopnik

<a href="http://www.newyorker.com/arts/critics/atlarge/2011/02/14/110214crat_atlarge_gopnik">The Information: How the Internet Gets Inside Us</a>


Visualize Me


What is Visualization?
Lev Manovich

What is Visualization?

Nathan Yau

<a href="http://flowingdata.com/2011/02/23/data-visualization-meets-game-design-to-explore-your-digital-life/">Data Visualization Meets Game Design to Explore your Digital Life</a>

<a href="http://bloom.io/">Bloom</a>


Mood-mapping

Celeste Biever

<a href="http://www.newscientist.com/article/dn19200-twitter-mood-maps-reveal-emotional-states-of-america.html">Twitter Mood Maps Reveal Emotional States of America</a>

<a href="http://www.newscientist.com/articlevideo/dn19200/221111468001-twitter-mood-maps-reveal-emotional-states-of-america.html">Twitter mood video</a>

ZglPWYb8X2o

<a href="http://www.moodscope.com/">Moodscope</a>

<a href="http://www.mappiness.org.uk">Mappiness</a>


The Visualized Human 

Nicholas Felton

<a href="http://feltron.com/">The Annual Felton Report</a>

Anya Kamenetz

<a href="http://www.fastcompany.com/1733627/mit-scientist-captures-his-sons-first-90000-hours-on-video">MIT Scientist Captures 90,000 Hours of Video of His Son’s First Words, Graphs It</a>

Johanna Drucker

<a href="http://mitworld.mit.edu/video/796">Humanistic Approaches to the Graphical Expression of Interpretation</a>


Search Me


Search-Engine Science

Emily H. Chan, Vikram Sahai, Corrie Conrad, and John S. Brownstein

<a href="http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC3104029&tool=pmcentrez">Using Web Search Query Data to Monitor Dengue Epidemics: A New Model for Neglected Tropical Disease Surveillance</a>

Annie Y.S. Lau, Enrico Coiera, Tatjana Zrimec, and Paul Compton

<a href="http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC2956236&tool=pmcentrez">Clinician Search Behaviors May Be Influenced by Search Engine Design</a>


The Science of Control

Alession Signorini Alberto Maria Segre, Philip M. Polgreen

<a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0019467">The Use of Twitter to Track Levels of Disease Activity and Public Concern in the U.S. During the Influenza A H1N1 Pandemic</a>

David Parry

<a href="http://www.livingbooksaboutlife.org/books/Surveillance">Surveilling Health, Surveillance </a>

Felix Stalder and Christine Mayer

<a href="http://felix.openflows.com/node/113">The Second Index: Search Engines, Personalization and Surveillance (Deep Search)</a>

Deep Search

Michael K. Bergman

<a href="http://quod.lib.umich.edu/cgi/t/text/text-idx?c=jep;view=text;rgn=main;idno=3336451.0007.104">The Deep Web: Surfacing Hidden Value</a>

Clare Birchall

The Invisible Web, <a href="http://www.livingbooksaboutlife.org/books/The_in/visible">The In/Visible</a>


White Noise

<a href="http://www.suicidemachine.org/">Web 2.0 Suicide Machine</a>

<a href="http://www.freedomboxfoundation.org/">Freedom Box Foundation</a>

<a href="http://navasse.net/traceblog/about.html">Traceblog</a>

<a href="http://turbulence.org/Works/JJPS/extension">The JJPS Firefox Extension</a> 


==

Appendix


Karl Popper, The Open Society and its Enemies

ukNkx45Ua0Y





Retrieved from ‘https://livingbooksaboutlife.org/wiki/index.php?title=Digitize_Me,_Visualize_Me,_Search_Me&oldid=1311’