Digitize Me, Visualize Me, Search Me: Difference between revisions
No edit summary |
No edit summary |
||
Line 19: | Line 19: | ||
[http://usefulchem.wikispaces.com/ Open Notebook Science ] | [http://usefulchem.wikispaces.com/ Open Notebook Science ] | ||
<br> | |||
Patrick O. Brown, Michael B. Eisen, Harold Varmus | Patrick O. Brown, Michael B. Eisen, Harold Varmus | ||
Line 25: | Line 25: | ||
[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0000036 Why PLoS Became a Publisher]<br> | [http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0000036 Why PLoS Became a Publisher]<br> | ||
<br> | |||
Sally Murray, Stephen Choi, John Hoey, Claire Kendall, James Maskalyk, and Anita Palepu<br> | Sally Murray, Stephen Choi, John Hoey, Claire Kendall, James Maskalyk, and Anita Palepu<br> | ||
Line 39: | Line 39: | ||
[http://www.psfk.com/2010/09/biocurious-a-community-lab-for-biotechnology.html BioCurious: A Community Lab for Biotechnology] | [http://www.psfk.com/2010/09/biocurious-a-community-lab-for-biotechnology.html BioCurious: A Community Lab for Biotechnology] | ||
<br> | |||
Richard Stallman | Richard Stallman | ||
Line 51: | Line 51: | ||
[http://biogang.openwetware.org/ Biogang] | [http://biogang.openwetware.org/ Biogang] | ||
<br> | |||
Bill Hooker<br> | Bill Hooker<br> | ||
Line 57: | Line 57: | ||
[http://3quarksdaily.blogs.com/3quarksdaily/2007/01/the_future_of_s.html The Future of Science is Open, Part 3: An Open Science World]<br> | [http://3quarksdaily.blogs.com/3quarksdaily/2007/01/the_future_of_s.html The Future of Science is Open, Part 3: An Open Science World]<br> | ||
<br> | |||
Chris Patil and Vivian Siegel<br> | Chris Patil and Vivian Siegel<br> | ||
Line 71: | Line 71: | ||
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877727/?tool=pmcentrez#pcbi.1000787-Hey1 What Do I Want from the Publisher of the Future?]<br> | [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877727/?tool=pmcentrez#pcbi.1000787-Hey1 What Do I Want from the Publisher of the Future?]<br> | ||
<br> | |||
Cameron Neylon<br> | Cameron Neylon<br> | ||
Line 87: | Line 87: | ||
[http://okfn.org/ Open Knowledge Foundation]<br> | [http://okfn.org/ Open Knowledge Foundation]<br> | ||
<br> | |||
Gaelle Krikorian and Amy Kapczynski, eds, <br> | Gaelle Krikorian and Amy Kapczynski, eds, <br> | ||
Line 99: | Line 99: | ||
[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200 A New Model for Open Sharing]<br> | [http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200 A New Model for Open Sharing]<br> | ||
<br> | |||
Thomas B. Kepler, Marc A. Marti-Renom, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd<br> | Thomas B. Kepler, Marc A. Marti-Renom, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd<br> | ||
Line 113: | Line 113: | ||
[http://www.metamute.org/proudtobeflesh The Packet Gang: Openness and its Discontents]<br> | [http://www.metamute.org/proudtobeflesh The Packet Gang: Openness and its Discontents]<br> | ||
<br> | |||
Michael Gurstein | Michael Gurstein | ||
Line 122: | Line 122: | ||
== '''Open Data''' == | == '''Open Data''' == | ||
'''Data-Intensive Science'''<br>Vincent S. Smith<br> | '''Data-Intensive Science'''<br>Vincent S. Smith<br> | ||
Line 127: | Line 128: | ||
[http://www.biomedcentral.com/1756-0500/2/113 Data Publication: Towards a Database of Everything]<br> | [http://www.biomedcentral.com/1756-0500/2/113 Data Publication: Towards a Database of Everything]<br> | ||
<br> | |||
Tony Hey, Stewart Tansley, Kristen Tolle, eds<br> | Tony Hey, Stewart Tansley, Kristen Tolle, eds<br> | ||
Line 139: | Line 140: | ||
[http://www.freeourdata.org.uk/ Free Our Data]<br> | [http://www.freeourdata.org.uk/ Free Our Data]<br> | ||
<br> | |||
Simon Rogers<br> | Simon Rogers<br> | ||
Line 151: | Line 152: | ||
[http://epubs.utah.edu/index.php/ulr/article/viewArticle/136 What Google Knows: Privacy and Internet Search Engines] | [http://epubs.utah.edu/index.php/ulr/article/viewArticle/136 What Google Knows: Privacy and Internet Search Engines] | ||
<br> | |||
Daniel Chandramohan, Kenji Shibuya, Philip Setel, Sandy Cairncross, Alan D. Lopez, Christopher J. L. Murray, Basia Żaba, Robert W. Snow, Fred Binka | Daniel Chandramohan, Kenji Shibuya, Philip Setel, Sandy Cairncross, Alan D. Lopez, Christopher J. L. Murray, Basia Żaba, Robert W. Snow, Fred Binka | ||
Line 163: | Line 164: | ||
'''Encode Me/Decode Me'''<br>[http://www.ornl.gov/sci/techresources/Human_Genome/home.shtml Human Genome Project]<br> | '''Encode Me/Decode Me'''<br>[http://www.ornl.gov/sci/techresources/Human_Genome/home.shtml Human Genome Project]<br> | ||
<br> | |||
The ENCODE Project Consortium | The ENCODE Project Consortium | ||
Line 169: | Line 170: | ||
[http://pubmedcentralcanada.ca/picrender.cgi?accid=PMC3079585&blobtype=pdf&tool=pmcentrez A User's Guide to the Encyclopaedia of DNA Elements (ENCODE) ]<br> | [http://pubmedcentralcanada.ca/picrender.cgi?accid=PMC3079585&blobtype=pdf&tool=pmcentrez A User's Guide to the Encyclopaedia of DNA Elements (ENCODE) ]<br> | ||
<br> | |||
[http://www.decodeme.com/about-decodeme deCODEme]<br><br> | [http://www.decodeme.com/about-decodeme deCODEme]<br><br> | ||
Line 177: | Line 178: | ||
[http://quantifiedself.com Quantified Self]<br> | [http://quantifiedself.com Quantified Self]<br> | ||
<br> | |||
Gary Wolf<br> | Gary Wolf<br> | ||
Line 183: | Line 184: | ||
[http://xrl.us/bh3d4g The Data-Driven Life]<br> | [http://xrl.us/bh3d4g The Data-Driven Life]<br> | ||
<br> | |||
Aiden R. Doherty and Alan F. Smeaton<br> | |||
[http://doras.dcu.ie/15300/1/Sensors-03-154-Doherty-ie-edited.pdf Automatically Augmenting Lifelog Events Using Pervasively Generated Content from Millions of People<br>] | |||
Jennifer S. Beaudin, Stephen S. Intille, and Margaret E. Morris | Jennifer S. Beaudin, Stephen S. Intille, and Margaret E. Morris | ||
Line 203: | Line 206: | ||
[http://www.newyorker.com/arts/critics/atlarge/2011/02/14/110214crat_atlarge_gopnik The Information: How the Internet Gets Inside Us]<br> | [http://www.newyorker.com/arts/critics/atlarge/2011/02/14/110214crat_atlarge_gopnik The Information: How the Internet Gets Inside Us]<br> | ||
<br> | |||
N. Katherine Hayles<br> | N. Katherine Hayles<br> | ||
Line 219: | Line 222: | ||
[http://manovich.net/blog/wp-content/uploads/2010/10/manovich_visualization_2010.doc What is Visualization?]<br> | [http://manovich.net/blog/wp-content/uploads/2010/10/manovich_visualization_2010.doc What is Visualization?]<br> | ||
<br> | |||
Nathan Yau<br> | Nathan Yau<br> | ||
Line 225: | Line 228: | ||
[http://flowingdata.com/2011/02/23/data-visualization-meets-game-design-to-explore-your-digital-life/ Data Visualization Meets Game Design to Explore your Digital Life]<br> | [http://flowingdata.com/2011/02/23/data-visualization-meets-game-design-to-explore-your-digital-life/ Data Visualization Meets Game Design to Explore your Digital Life]<br> | ||
<br> | |||
[http://bloom.io/ Bloom]<br> | [http://bloom.io/ Bloom]<br> | ||
Line 237: | Line 240: | ||
[http://www.newscientist.com/article/dn19200-twitter-mood-maps-reveal-emotional-states-of-america.html Twitter Mood Maps Reveal Emotional States of America]<br> | [http://www.newscientist.com/article/dn19200-twitter-mood-maps-reveal-emotional-states-of-america.html Twitter Mood Maps Reveal Emotional States of America]<br> | ||
<br> | |||
[http://www.newscientist.com/articlevideo/dn19200/221111468001-twitter-mood-maps-reveal-emotional-states-of-america.html Twitter mood video]<br> | [http://www.newscientist.com/articlevideo/dn19200/221111468001-twitter-mood-maps-reveal-emotional-states-of-america.html Twitter mood video]<br> | ||
Line 243: | Line 246: | ||
<youtube>ZglPWYb8X2o</youtube> | <youtube>ZglPWYb8X2o</youtube> | ||
<br> | |||
[http://www.moodscope.com/ Moodscope]<br> | [http://www.moodscope.com/ Moodscope]<br> | ||
<br> | |||
[http://www.mappiness.org.uk Mappiness]<br> | [http://www.mappiness.org.uk Mappiness]<br> | ||
Line 259: | Line 262: | ||
[http://feltron.com/ The Annual Felton Report]<br> | [http://feltron.com/ The Annual Felton Report]<br> | ||
<br> | |||
Deb Roy | Deb Roy | ||
Line 267: | Line 270: | ||
<youtube>RE4ce4mexrU</youtube> | <youtube>RE4ce4mexrU</youtube> | ||
<br> | |||
Johanna Drucker | Johanna Drucker | ||
Line 287: | Line 290: | ||
[http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC3104029&tool=pmcentrez Using Web Search Query Data to Monitor Dengue Epidemics: A New Model for Neglected Tropical Disease Surveillance] | [http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC3104029&tool=pmcentrez Using Web Search Query Data to Monitor Dengue Epidemics: A New Model for Neglected Tropical Disease Surveillance] | ||
<br> | |||
Annie Y.S. Lau, Enrico Coiera, Tatjana Zrimec, and Paul Compton | Annie Y.S. Lau, Enrico Coiera, Tatjana Zrimec, and Paul Compton | ||
Line 301: | Line 304: | ||
[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0019467 The Use of Twitter to Track Levels of Disease Activity and Public Concern in the U.S. During the Influenza A H1N1 Pandemic]<br> | [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0019467 The Use of Twitter to Track Levels of Disease Activity and Public Concern in the U.S. During the Influenza A H1N1 Pandemic]<br> | ||
<br> | |||
David Parry | David Parry | ||
Line 307: | Line 310: | ||
[http://www.livingbooksaboutlife.org/books/Surveillance ''Surveillance'' ]<br> | [http://www.livingbooksaboutlife.org/books/Surveillance ''Surveillance'' ]<br> | ||
<br> | |||
Felix Stalder and Christine Mayer<br> | Felix Stalder and Christine Mayer<br> | ||
Line 321: | Line 324: | ||
[http://quod.lib.umich.edu/cgi/t/text/text-idx?c=jep;view=text;rgn=main;idno=3336451.0007.104 The Deep Web: Surfacing Hidden Value] | [http://quod.lib.umich.edu/cgi/t/text/text-idx?c=jep;view=text;rgn=main;idno=3336451.0007.104 The Deep Web: Surfacing Hidden Value] | ||
<br> | |||
Clare Birchall<br> | Clare Birchall<br> | ||
Line 333: | Line 336: | ||
[http://www.suicidemachine.org/ Web 2.0 Suicide Machine] | [http://www.suicidemachine.org/ Web 2.0 Suicide Machine] | ||
<br> | |||
[http://www.freedomboxfoundation.org/ Freedom Box Foundation] | [http://www.freedomboxfoundation.org/ Freedom Box Foundation] | ||
<br> | |||
[http://navasse.net/traceblog/about.html Traceblog] | [http://navasse.net/traceblog/about.html Traceblog] | ||
<br> | |||
[http://turbulence.org/Works/JJPS/extension The JJPS Firefox Extension] | [http://turbulence.org/Works/JJPS/extension The JJPS Firefox Extension] |
Revision as of 11:31, 4 September 2011
Digitize Me, Visualize Me, Search Me: Open Science and its Discontents
edited by Gary Hall
Introduction: On the Limits of Openness (Living Books Mix)
Open Science
It’s An Open (Science), Open (Access), Open (Source), Open (Notebook) World
Patrick O. Brown, Michael B. Eisen, Harold Varmus
Sally Murray, Stephen Choi, John Hoey, Claire Kendall, James Maskalyk, and Anita Palepu
Open Science, Open Access and Open Source Software at Open Medicine
Community Science
BioCurious: A Community Lab for Biotechnology
Richard Stallman
Free Community Science and the Free Development of Science
‘This Revolution Will Be Digitized’: Online Tools for Open Science
Bill Hooker
The Future of Science is Open, Part 3: An Open Science World
Chris Patil and Vivian Siegel
This Revolution Will Be Digitized: Online Tools for Radical Collaboration
Open Science Publishing
Philip E. Bourne
What Do I Want from the Publisher of the Future?
Cameron Neylon
Science in the Open/or/How I Learned to Stop Worrying and Love My Blog
Open Knowledge
Open Access to Knowledge
Gaelle Krikorian and Amy Kapczynski, eds,
Access to Knowledge In the Age of Intellectual Property
New Models for Open Sharing and Open Research
Anne H. Margulies
Thomas B. Kepler, Marc A. Marti-Renom, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd
Open Source Research - The Power of Us
Open Knowledge and its Discontents
J.J. King
The Packet Gang: Openness and its Discontents
Michael Gurstein
Open Data
Data-Intensive Science
Vincent S. Smith
Data Publication: Towards a Database of Everything
Tony Hey, Stewart Tansley, Kristen Tolle, eds
Scholarly Communication, The Fourth Paradigm: Data-Intensive Scientific Discovery
World of Data
Simon Rogers
How Canada Became an Open Data and Data Journalism Powerhouse
We Can Know It For You
Omer Tene
What Google Knows: Privacy and Internet Search Engines
Daniel Chandramohan, Kenji Shibuya, Philip Setel, Sandy Cairncross, Alan D. Lopez, Christopher J. L. Murray, Basia Żaba, Robert W. Snow, Fred Binka
Should Data from Demographic Surveillance Systems Be Made More Widely Available to Researchers?
Digitize Me
Encode Me/Decode Me
Human Genome Project
The ENCODE Project Consortium
A User's Guide to the Encyclopaedia of DNA Elements (ENCODE)
Life-Tracking
Gary Wolf
Aiden R. Doherty and Alan F. Smeaton
Automatically Augmenting Lifelog Events Using Pervasively Generated Content from Millions of People
Jennifer S. Beaudin, Stephen S. Intille, and Margaret E. Morris
To Track or Not to Track: User Reactions to Concepts in Longitudinal Health Monitoring
The Neurological Turn: or, ‘How the Internet Gets Inside Us’
Adam Gopnik
The Information: How the Internet Gets Inside Us
N. Katherine Hayles
Hyper and Deep Attention: The Generation Divide in Cognitive Modes
Visualize Me
What is Visualization?
Lev Manovich
Nathan Yau
Data Visualization Meets Game Design to Explore your Digital Life
Mood-mapping
Celeste Biever
Twitter Mood Maps Reveal Emotional States of America
The Visualized Human
Nicholas Felton
Deb Roy
Johanna Drucker
Humanistic Approaches to the Graphical Expression of Interpretation
Search Me
Search-Engine Science
Emily H. Chan, Vikram Sahai, Corrie Conrad, and John S. Brownstein
Annie Y.S. Lau, Enrico Coiera, Tatjana Zrimec, and Paul Compton
Clinician Search Behaviors May Be Influenced by Search Engine Design
The Science of Control
Alession Signorini Alberto Maria Segre, Philip M. Polgreen
David Parry
Felix Stalder and Christine Mayer
The Second Index: Search Engines, Personalization and Surveillance (Deep Search)
Deep Search
Michael K. Bergman
The Deep Web: Surfacing Hidden Value
Clare Birchall
The Invisible Web, The In/Visible
Media Gifts?
==
Appendix
Karl Popper, The Open Society and its Enemies