Digitize Me, Visualize Me, Search Me

Digitize Me, Visualize Me, Search Me: From Open Science to Open Humanities and Beyond

edited by Gary Hall


Gary Hall

Introduction: White Noise (coming soon...)


Open Science


It’s An Open (Science), Open (Access), Open (Source), Open (Notebook) World

Patrick O. Brown, Michael B. Eisen, Harold Varmus

Why PLoS Became a Publisher

Sally Murray, Stephen Choi, John Hoey, Claire Kendall, James Maskalyk, and Anita Palepu

Open Science, Open Access and Open Source Software at Open Medicine

Open Notebook Science


Community Science

Richard Stallman

Free Community Science and the Free Development of Science
BioCurious: A Community Lab for Biotechnology


‘This Revolution Will Be Digitized’: Online Tools for Open Science

Bill Hooker

The Future of Science is Open, Part 3: An Open Science World

Chris Patil and Vivian Siegel

This Revolution Will Be Digitized: Online Tools for Radical Collaboration

Biogang


Open Science Publishing

Philip E. Bourne

What Do I Want from the Publisher of the Future?

Cameron Neylon

Science in the Open/or/How I Learned to Stop Worrying and Love My Blog


Open Knowledge


Open Access to Knowledge

Gaelle Krikorian and Amy Kapczynski, eds,

Access to Knowledge In the Age of Intellectual Property

Open Knowledge Foundation


New Models for Open Sharing and Open Research
Anne H. Margulies

A New Model for Open Sharing

Thomas B Kepler, Marc A. Marti-Renom, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd

Open Source Research - The Power of Us


Open Knowledge and Its Discontents

JJ King

The Packet Gang: Openness and its Discontents

Michael Gurstein

Are the Open Data Warriors Fighting for Robin Hood or the Sheriff?: Some Reflections on OKCon 2011 and the Emerging Data Divide


Open Data

Data-Intensive Science
Vincent S Smith

Data Publication: Towards a Database of Everything


Tony Hey, Stewart Tansley, Kristen Tolle, eds

Part 4: Scholarly Communication, The Fourth Paradigm: Data-Intensive Scientific Discovery


World of Data

Free Our Data


Simon Rogers

How Canada Became an Open Data and Data Journalism Powerhouse



 We Can Know It For You

Daniel Chandramohan, Kenji Shibuya, Philip Setel, Sandy Cairncross, Alan D. Lopez, Christopher J. L. Murray, Basia Żaba, Robert W. Snow, Fred Binka

Should Data from Demographic Surveillance Systems Be Made More Widely Available to Researchers?


Gary Hall

We Can Know It For You: The Secret Life of Metadata


Digitize Me!

Encode Me/Decode Me
Human Genome Project

The ENCODE Project Consortium

A User's Guide to the Encyclopaedia of DNA Elements (ENCODE)


deCODEme

Life-Tracking
Gary Wolf

The Data-Driven Life


Quantified Self

Aiden R. Doherty and Alan F. Smeaton

Automatically Augmenting Lifelog Events Using Pervasively Generated Content from Millions of People


Jennifer S Beaudin, Stephen S Intille, and Margaret E Morris

To Track or Not to Track: User Reactions to Concepts in Longitudinal Health Monitoring


The Neurological Turn: or, ‘How the Internet Gets Inside Us’

N. Katherine Hayles

Hyper and Deep Attention: The Generation Divide in Cognitive Modes


Adam Gopnik

The Information: How the Internet Gets Inside Us


Visualize Me!


What is Visualisation?
Lev Manovich

What is Visualization?

Nathan Yau

Data Viisualization Meets Game Design to Explore your Digital Life

Bloom


Mood-mapping

Celeste Biever

Twitter Mood Maps Reveal Emotional States of America

Twitter mood video

Moodscope

The Human and/as Spectacle

Nicholas Felton

The Annual Felton Report

Anya Kamenetz

MIT Scientist Captures 90,000 Hours of Video of His Son’s First Words, Graphs It

Johanna Drucker

Humanistic Approaches to the Graphical Expression of Interpretation


Search Me!


Search-Engine Science

Emily H. Chan, Vikram Sahai, Corrie Conrad, and John S. Brownstein

Using Web Search Query Data to Monitor Dengue Epidemics: A New Model for Neglected Tropical Disease Surveillance


Alession Signorini Alberto Maria Segre, Philip M. Polgreen

The Use of Twitter to Track Levels of Disease Activity and Public Concern in the U.S. During the Influenza A H1N1 Pandemic


The Science of Control

Annie YS Lau, Enrico Coiera, Tatjana Zrimec, and Paul Compton,

Clinician Search Behaviors May Be Influenced by Search Engine Design


Felix Stalder and Christine Mayer

The Second Index: Search Engines, Personalization and Surveillance

Appendix


Karl Popper, The Open Society and its Enemies

Karl Popper, The Open Society