Human genomics/Attributions: Difference between revisions

No edit summary
m (Unprotected "Human genomics/Attributions")
 
(26 intermediate revisions by 3 users not shown)
Line 1: Line 1:
Attributions
[http://www.livingbooksaboutlife.org/books/Human_Genomics Back to the book]
 
<br><br>
==== Section 4: Individual genomes: biodigital artefacts&nbsp;  ====
Franklin, R. & Gosling, R.G. (1953) 'Evidence for 2-Chain Helix in Crystalline Structure of Sodium Deoxyribonucleate', ''Nature'' 172, 156-157 (1953)<br>
 
Link: http://www.nature.com/nature/dna50/franklingosling2.pdf<br>
*Eriksson N, Macpherson JM, Tung JY, Hon LS, Naughton B, et al. 2010 Web-Based, Participant-Driven Studies Yield Novel Genetic Associations for Common Traits. PLoS Genet 6(6): e1000993. doi:10.1371/journal.pgen.1000993
Licence: Copyright © 2003 Nature Publishing Group. Made freely available on the ''Nature'' website and offered here via a link.
 
<br><br>
<br>PloS Genetics is an open access journal
Watson J. D. & Crick F.H.C. (1953) 'A Structure for Deoxyribose Nucleic Acid', ''Nature'' 171, 737-738.<br>
 
Link: http://www.nature.com/nature/dna50/watsoncrick.pdf<br>
*Ashley EA, Butte AJ, Wheeler MT, Chen R, Klein TE, Dewey FE, Dudley JT, Ormond KE, Pavlovic A, Morgan AA, Pushkarev D,Neff NF, Hudgins L, Gong L, Hodges LM, Berlin DS, Thorn CF, Sangkuhl K, Hebert JM, Woon M, Sagreiya H, Whaley R, Knowles JW, Chou MF, Thakuria JV, Rosenbaum AM, Zaranek AW, Church GM, Greely HT, Quake SR, Altman RB (2010) Clinical assessment incorporating a personal genome. Lancet 375: 1525-35. PMID: 20435227
Licence: Copyright © 2003 Nature Publishing Group. Made freely available on the ''Nature'' website and offered here via a link.
 
<br><br>
Full text freely available via PubMed<br>
Botstein, D., White, R. L., Skolnick, M., & Davis, R. W. (1980) 'Construction of a genetic linkage map in man using restriction fragment length polymorphisms'. ''Am J Hum Genet''. May; 32(3): 314–331.<br>
 
Link: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1686077/pdf/ajhg00189-0020.pdf<br>
Lancet. Author manuscript; available in PMC 2010 September 12. Published in final edited form as: Lancet. 2010 May 1; 375(9725): 1525–1535. doi: 10.1016/S0140-6736(10)60452-7<br>PMCID: PMC2937184 NIHMSID: NIHMS221253
License: Copyright: ''Am J Hum Gene''. Available via a link to PubMed Central. PMCID: PMC1686077.
 
<br><br>
==== <br>Section 3: Bioinformatics  ====
Subcommittee of the
 Health and Environmental Research Advisory Committee (1987) Report on the Human Genome Initiative, Office of Health and Environmental Research.
 
Link: http://www.ornl.gov/sci/techresources/Human_Genome/project/herac2.shtml<br>
<br>Ng PC, Levy S, Huang J, Stockwell TB, Walenz BP, et al. 2008 Genetic Variation in an Individual Human Exome. Genetic Variation in an Individual Human Exome<br>PLoS Genetics 4(8): e1000160. doi:10.1371/journal.pgen.1000160 <br>PloS Genetics is an open access journal
License: public domain (USA), available here via a link to the Oak Ridge National Laboratory website. Copyright: U.S. Department of Energy Genome Program's Biological and Environmental Research Information System (BERIS).
 
<br><br>
==== <br><br> ====
U.S. Congress, Office of Technology Assessment (1988) 'Mapping Our Genes: The Genome Projects. How Big, How Fast?', OTA-BA-373 (Washington, DC: U.S. Government Printing Office, April ).<br>
 
Link: http://www.ornl.gov/sci/techresources/Human_Genome/publicat/OTAreport.pdf<br>
*International HapMap Consortium. (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature 449(7164): 851-861.
License: Public domain (USA), available here via a link to the Oak Ridge National Laboratory website. Copyright: Office of Technology Assessment (USA).
 
<br><br>
Available for public use via the International Haplotype Consortium: http://hapmap.ncbi.nlm.nih.gov/downloads/presentations/nature_hapmap3.pdf
Amberger, J., Bocchini, C. A., Scott, A. F. & Hamosh McKusick A. (2009) 'Online Mendelian Inheritance in Man (OMIM®)', ''Nucleic Acids Res''. January; 37 (Database issue): D793–D796. Published online in PubMed Central 2009 January. doi: 10.1093/nar/gkn665 <br>
 
Link: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686440/<br>
==== <br> ====
License: Copyright © 2008 The Author(s). This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
 
<br><br>
The following articles are provided via links to Nature and Science respectively. Nature and Science do not allow reproduction of their materials elsewhere.  
Fore, J. Jr., Wiechers, l. R., & Cook-Deegan, R. (2006) 'The effects of business practices, licensing, and intellectual property on development and dissemination of the polymerase chain reaction: case study', ''Journal of Biomedical Discovery and Collaboration'', 1:7, doi:10.1186/1747-5333-1-7.<br>
 
Link: http://j-biomed-discovery.com/content/1/1/7<br>
*International Human Genome Sequencing Consortium (2001). "Initial sequencing and analysis of the human genome." Nature 409 (6822): 860–921. doi:10.1038/35057062. PMID 11237011.
License: © 2006 Fore et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
 
<br><br>
This article is freely available from but subject to Nature publishing group copyright. Nature does not allow reposting of the PDF but does permit direct links to it.
Ng P. C., Levy, S., Huang, J., Stockwell, T. B., Walenz, B. P. ''et al.'' (2008) 'Genetic Variation in an Individual Human Exome', ''PLoS Genetics'' 4(8): e1000160. doi:10.1371/journal.pgen.1000160.<br>
 
Link: http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1000160<br>
*Venter, Craig J. et al. 2001. The Sequence of the Human Genome, Science 16 February 2001: Vol. 291 no. 5507 pp. 1304-1351 DOI: 10.1126/science.1058040
License: Creative Commons Attribution License<br>Copyright: Ng PC, Levy S, Huang J, Stockwell TB, Walenz BP, ''et al''.
 
<br><br>
The Website, including without limitation, the text, software, scripts, graphics, photos, sounds, videos, and the like and the trademarks, service marks, and logos contained therein ("Marks"), are owned by or licensed to the American Association for the Advancement of Science (AAAS), the owner and publisher of the Science family of publications, whose headquarters are at 1200 New York Avenue, NW, Washington, DC 20005. All copyright, trademark, service marks, and other intellectual property on this Website are protected by and subject to copyright and other intellectual property rights under United States law.
International HapMap Consortium (2007) 'A second generation human haplotype map of over 3.1 million SNPs', ''Nature'' 449(7164): 851-861.<br>
 
Link: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689609/?tool=pubmed<br>
==== Section 6: Biochemistry, patents and genomics  ====
License: Creative Commons author manuscript available in PubMed Central 2009 June 2 and offered here via a link. Copyright: Nature Publishing Group.
 
<br><br>
Fore, Joe Jr. Wiechers, lse R. and Cook-Deegan, Robert. 2006. The effects of business practices, licensing, and intellectual property on development and dissemination of the polymerase chain reaction: case study Journal of Biomedical Discovery and Collaboration 2006, 1:7doi:10.1186/1747-5333-1-7  
International Human Genome Sequencing Consortium (2001) 'Initial sequencing and analysis of the human genome', ''Nature'' 409 (6822): 860–921.<br>
 
Link: http://www.nature.com/nature/journal/v409/n6822/full/409860a0.html<br>
This is an open access article the Journal of Biomedical Discovery and Collaboration defines open access as follows:  
Licence: doi:10.1038/35057062. PMID 11237011. <br>Copyright: Nature Publishing Group. Made freely available on the ''Nature'' website and offered here via a link.
 
<br><br>
Open Access: Articles with this logo are immediately and permanently available online. Unrestricted use, distribution and reproduction in any medium is permitted, provided the article is properly cited. By open data we mean that it is freely available on the public internet permitting any user to download, copy, analyse, re-process, pass them to software or use them for any other purpose without financial, legal, or technical barriers other than those inseparable from gaining access to the internet itself. We encourage the use of fully open formats wherever possible.<br>Anyone is free:<br> to copy, distribute, and display the work;<br> to make derivative works;<br> to make commercial use of the work;<br> <br>Under the following conditions: Attribution<br>• the original author must be given credit;<br>• for any reuse or distribution, it must be made clear to others what the license terms of this work are;<br>• any of these conditions can be waived if the authors gives permission.<br>Statutory fair use and other rights are in no way affected by the above.
Venter, Craig J. ''et al.'' (2001) 'The Sequence of the Human Genome', ''Science'' 16 February: Vol. 291 no. 5507: 1304-1351 DOI: 10.1126/science.1058040<br>
 
Link: http://www.sciencemag.org/content/291/5507/1304.full<br>
 
Copyright: AAAS. Made freely available on the ''Science'' website and offered here via a link.
 
<br><br>
==== Section 7: Creating maps  ====
Eriksson N., Macpherson, J. M., Tung, J. Y., Hon L. S., Naughton B., ''et al.'' (2010) 'Web-Based, Participant-Driven Studies Yield Novel Genetic Associations for Common Traits', ''PLoS Genetics'' 6(6): e1000993. doi:10.1371/journal.pgen.1000993<br>
 
Link: http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1000993<br>
<br>D Botstein, R L White, M Skolnick, and R W Davis. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet. 1980 May; 32(3): 314–331.  
License: Copyright© 2010 Eriksson et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
 
<br><br>
PMCID: PMC1686077
Ashley E. A., Butte AJ, Wheeler MT, Chen R, Klein TE, Dewey FE, Dudley JT, Ormond KE, Pavlovic A, Morgan AA, Pushkarev D,Neff NF, Hudgins L, Gong L, Hodges LM, Berlin DS, Thorn CF, Sangkuhl K, Hebert JM, Woon M, Sagreiya H, Whaley R, Knowles JW, Chou MF, Thakuria JV, Rosenbaum AM, Zaranek AW, Church GM, Greely HT, Quake SR, Altman RB (2010) 'Clinical assessment incorporating a personal genome', ''Lancet'' 375: 1525-35. PMID: 20435227<br>
 
Link: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937184/<br>
Full text is available as a scanned copy of the original print version. Get a printable copy (PDF file) of the complete article (1.8M), or click on a page image below to browse page by page. Articles from the American Journal of Human Genetics are provided in PubMed courtesy of American Society of Human Genetics.  
License: Author manuscript; available in PubMed Central 2010 September 12, and offered here via a link. Copyright: © Elsevier Limited.
 
Subcommittee of the
Health and Environmental Research Advisory Committee. 1987. Report on the Human Genome Initiative, Office of Health and Environmental Research.  
 
U.S. Congress, Office of Technology Assessment. 1988. Mapping Our Genes-The Genome Projects. How Big, How Fast? OTA-BA-373 (Washington, DC: U.S. Government Printing Office, April 1988).
 
Document Use and Credits: Publications and webpages on this site were created by the U.S. Department of Energy Genome Program's Biological and Environmental Research Information System (BERIS). Permission to use these documents is not needed, but please credit the U.S. Department of Energy Genome Programs and provide the website http://genomics.energy.gov. All other materials were provided by third parties and not created by the U.S. Department of Energy. You must contact the person listed in the citation before using those documents. Base URL: www.ornl.gov/hgmis<br>Site sponsored by the U.S. Department of Energy Office of Science, Office of Biological and Environmental Research, Human Genome Program
 
==== <br>Section 8: Making catalogues  ====
 
 
 
Joanna Amberger, Carol A. Bocchini, Alan F. Scott, and Ada Hamosh McKusick's Online Mendelian Inheritance in Man (OMIM®) Nucleic Acids Res. 2009 January; 37(Database issue): D793–D796. Published online 2009 January. doi: 10.1093/nar/gkn665
 
Copyright © 2008 The Author(s)  
 
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
 
==== <br>Section 9: New genetics ====
 
 
 
Franklin R. and Gosling R.G. 1953. Evidence for 2-Chain Helix in Crystalline Structure of Sodium Deoxyribonucleate Nature 172, 156-157 (1953)
 
Watson J.D. and Crick F.H.C. 1953. A Structure for Deoxyribose Nucleic Acid Nature 171, 737-738 (1953)
 
These articles are both © 2003 Nature Publishing Group. They are freely available from the Nature Archive as PDFs on the site for use within the terms of copyright. <br>

Latest revision as of 19:46, 25 October 2011

Back to the book

Franklin, R. & Gosling, R.G. (1953) 'Evidence for 2-Chain Helix in Crystalline Structure of Sodium Deoxyribonucleate', Nature 172, 156-157 (1953)
Link: http://www.nature.com/nature/dna50/franklingosling2.pdf
Licence: Copyright © 2003 Nature Publishing Group. Made freely available on the Nature website and offered here via a link.

Watson J. D. & Crick F.H.C. (1953) 'A Structure for Deoxyribose Nucleic Acid', Nature 171, 737-738.
Link: http://www.nature.com/nature/dna50/watsoncrick.pdf
Licence: Copyright © 2003 Nature Publishing Group. Made freely available on the Nature website and offered here via a link.

Botstein, D., White, R. L., Skolnick, M., & Davis, R. W. (1980) 'Construction of a genetic linkage map in man using restriction fragment length polymorphisms'. Am J Hum Genet. May; 32(3): 314–331.
Link: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1686077/pdf/ajhg00189-0020.pdf
License: Copyright: Am J Hum Gene. Available via a link to PubMed Central. PMCID: PMC1686077.

Subcommittee of the
 Health and Environmental Research Advisory Committee (1987) Report on the Human Genome Initiative, Office of Health and Environmental Research. Link: http://www.ornl.gov/sci/techresources/Human_Genome/project/herac2.shtml
License: public domain (USA), available here via a link to the Oak Ridge National Laboratory website. Copyright: U.S. Department of Energy Genome Program's Biological and Environmental Research Information System (BERIS).

U.S. Congress, Office of Technology Assessment (1988) 'Mapping Our Genes: The Genome Projects. How Big, How Fast?', OTA-BA-373 (Washington, DC: U.S. Government Printing Office, April ).
Link: http://www.ornl.gov/sci/techresources/Human_Genome/publicat/OTAreport.pdf
License: Public domain (USA), available here via a link to the Oak Ridge National Laboratory website. Copyright: Office of Technology Assessment (USA).

Amberger, J., Bocchini, C. A., Scott, A. F. & Hamosh McKusick A. (2009) 'Online Mendelian Inheritance in Man (OMIM®)', Nucleic Acids Res. January; 37 (Database issue): D793–D796. Published online in PubMed Central 2009 January. doi: 10.1093/nar/gkn665
Link: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686440/
License: Copyright © 2008 The Author(s). This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Fore, J. Jr., Wiechers, l. R., & Cook-Deegan, R. (2006) 'The effects of business practices, licensing, and intellectual property on development and dissemination of the polymerase chain reaction: case study', Journal of Biomedical Discovery and Collaboration, 1:7, doi:10.1186/1747-5333-1-7.
Link: http://j-biomed-discovery.com/content/1/1/7
License: © 2006 Fore et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Ng P. C., Levy, S., Huang, J., Stockwell, T. B., Walenz, B. P. et al. (2008) 'Genetic Variation in an Individual Human Exome', PLoS Genetics 4(8): e1000160. doi:10.1371/journal.pgen.1000160.
Link: http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1000160
License: Creative Commons Attribution License
Copyright: Ng PC, Levy S, Huang J, Stockwell TB, Walenz BP, et al.

International HapMap Consortium (2007) 'A second generation human haplotype map of over 3.1 million SNPs', Nature 449(7164): 851-861.
Link: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689609/?tool=pubmed
License: Creative Commons author manuscript available in PubMed Central 2009 June 2 and offered here via a link. Copyright: Nature Publishing Group.

International Human Genome Sequencing Consortium (2001) 'Initial sequencing and analysis of the human genome', Nature 409 (6822): 860–921.
Link: http://www.nature.com/nature/journal/v409/n6822/full/409860a0.html
Licence: doi:10.1038/35057062. PMID 11237011.
Copyright: Nature Publishing Group. Made freely available on the Nature website and offered here via a link.

Venter, Craig J. et al. (2001) 'The Sequence of the Human Genome', Science 16 February: Vol. 291 no. 5507: 1304-1351 DOI: 10.1126/science.1058040
Link: http://www.sciencemag.org/content/291/5507/1304.full
Copyright: AAAS. Made freely available on the Science website and offered here via a link.

Eriksson N., Macpherson, J. M., Tung, J. Y., Hon L. S., Naughton B., et al. (2010) 'Web-Based, Participant-Driven Studies Yield Novel Genetic Associations for Common Traits', PLoS Genetics 6(6): e1000993. doi:10.1371/journal.pgen.1000993
Link: http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1000993
License: Copyright: © 2010 Eriksson et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Ashley E. A., Butte AJ, Wheeler MT, Chen R, Klein TE, Dewey FE, Dudley JT, Ormond KE, Pavlovic A, Morgan AA, Pushkarev D,Neff NF, Hudgins L, Gong L, Hodges LM, Berlin DS, Thorn CF, Sangkuhl K, Hebert JM, Woon M, Sagreiya H, Whaley R, Knowles JW, Chou MF, Thakuria JV, Rosenbaum AM, Zaranek AW, Church GM, Greely HT, Quake SR, Altman RB (2010) 'Clinical assessment incorporating a personal genome', Lancet 375: 1525-35. PMID: 20435227
Link: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937184/
License: Author manuscript; available in PubMed Central 2010 September 12, and offered here via a link. Copyright: © Elsevier Limited.