Pharmacology/Attributions

2011-09-28T16:52:25Z

62.30.249.131:

Symbiosis

2011-09-28T16:16:48Z

62.30.249.131: /* Symbiogenetics */

<img src="/wiki/images/thumb/Symbiosis1.jpg/318px-Symbiosis1.jpg" _fck_mw_filename="Symbiosis1.jpg" _fck_mw_location="right" _fck_mw_width="318" _fck_mw_height="450" alt="Symbiosis1.jpg" class="fck_mw_right" /> 

<h1> Symbiosis: Ecologies, Assemblages and Evolution </h1>
edited by Janneke Adema and Pete Woodbridge
__TOC__ 

<h1> Introduction </h1>
<hr />
 

<pre class="_fck_mw_lspace"> <img src="http://www.livingbooksaboutlife.org/wiki/images/thumb/a/a2/Cladonia_macilenta.jpg/293px-Cladonia_macilenta.jpg" _fck_mw_filename="Cladonia macilenta.jpg" _fck_mw_width="347" _fck_mw_height="391" alt="Cladonia macilenta" /> <img src="http://www.livingbooksaboutlife.org/wiki/images/thumb/9/94/Amphiprion_percula.JPG/356px-Amphiprion_percula.JPG" _fck_mw_filename="Amphiprion percula.JPG" _fck_mw_width="356" _fck_mw_height="391" alt="Amphiprion percula.JPG" /> <img src="http://upload.wikimedia.org/wikipedia/commons/3/33/PloverCrocodileSymbiosis.jpg" _fck_mw_filename="PloverCrocodileSymbiosis.jpg" alt="" />
</pre>
<h1>Symbiosis and Evolution </h1>
<hr />
 {{#widget:Vimeo|id=7461457}}
 
Watson, R. A. and Pollack, J. B.
<a href="http://eprints.ecs.soton.ac.uk/12009/">How Symbiosis Can Guide Evolution</a>
 Fabio Lucian and Samuel Alizon
<a href="http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000565">The Evolutionary Dynamics of a Rapidly Mutating Virus within and between Hosts: The Case of Hepatitis C Virus </a>
 
<a href="http://www.wired.com/wiredscience/2010/01/green-sea-slug/">Green Sea Slug Is Part Animal, Part Plant</a>
 
 

<h2> Endosymbiosis </h2>
 <img src="http://www.livingbooksaboutlife.org/wiki/images/thumb/c/c5/Endosymbiosis.PNG/354px-Endosymbiosis.PNG" _fck_mw_filename="Endosymbiosis.PNG" _fck_mw_width="377" _fck_mw_height="394" alt="Endosymbiosis.PNG" />
 Jian Xu, Michael A. Mahowald, Ruth E. Ley et.al.
<a href="http://journal.pbio.0050156.PDF">Evolution of Symbiotic Bacteria in the Distal Human Intestine</a>
 Jennifer J. Wernegreen
<a href="http://journal.pbio.0020068.PDF">Endosymbiosis: Lessons in Conflict Resolution</a>
 

<h2> Symbiogenetics </h2>
 
Ivan Emmanuel Wallin
<a href="http://www.archive.org/download/symbionticismori00wall/symbionticismori00wall.pdf">Symbionticism and the origin of species (1927)</a> 

<h2> Life Systems/Gaia Hypothesis</h2>
Fritjof Capra
<a href="http://www.mountainman.com.au/f_capra.html">The Turning Point: Chapter on the Systems View of Life</a>
James Lovelock/Lynn Margulis
<a href="http://www.mountainman.com.au/gaia_lyn.html">The Gaia Hypothesis</a>
 

<h1> Symbiosis and Ecology </h1>
<hr />
<h2> Community Ecology </h2>
 Jos C. Mieog, Jeanine L. Olsen, Ray Berkelmans et.al.
<a href="http://journal.pone.0006364.PDF">The Roles and Interactions of Symbiont, Host and Environment in Defining Coral Fitness</a>
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<h2> Biodiversity and complexity </h2>
 Christina Toft, Tom A. Williams, and Mario A. Fares
<a href="http://PMC2659769.PDF">Genome-Wide Functional Divergence after the Symbiosis of Proteobacteria with Insects Unraveled through a Novel Computational Approach</a>

<h2> Interdependence </h2>
 R-mWCPa9y3c viiA5s8DV7I BNl6fOd26Q0

<h2> Media Ecologies </h2>
 Matthew Fuller <a href="http://mitpress.mit.edu/books/chapters/026256226Xintro1.pdf">Media Ecologies </a>
 

<h1> Symbiosis and Posthumanism </h1>
<hr />
<h2> Human/Machine Symbiosis </h2>
J.C.R. Licklider
<a href="http://memex.org/licklider.pdf">Man-Computer symbiosis</a>
 
Gerwin Schalk
<a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2722922/">Brain-Computer Symbiosis</a>
 V-NS6l_Fg-0 oLalkcMDCwg

<h2> Human-animal hybrids, chimeras and symbiosis </h2>
 Anant Bhan, Peter A Singer, and Abdallah S Daar
<a href="http://biomedcentral.com/content/pdf/1472-698X-10-8.PDF">Human-animal chimeras for vaccine development: an endangered species or opportunity for the developing world?</a>
 

<h2> Machinic assemblages: Bugs, machines and viruses </h2>
 
Susan Schuppli
<a href="http://www.cosmosandhistory.org/index.php/journal/article/download/103-222-1-PB.PDF">Of Mice Moths and Men Machines</a>
 Jussi Parikka
<a href="http://four.fibreculturejournal.org/fcj-019-digital-monsters-binary-aliens-%E2%80%93-computer-viruses-capitalism-and-the-flow-of-information/">Digital Monsters, Binary Aliens – Computer Viruses, Capitalism and the Flow of Information</a>
 XwpHhkXnWeA
 Melinda Rackham 
<a href="http://www.culturemachine.net/index.php/cm/article/view/291/276">Carrier becoming symborg</a>
 Mitchell Whitelaw
<a href="http://pylon.tv/andy_gracie_symbiotic_circuits.htm">Andy Gracie: Symbiotic Circuits</a>
 

<h1>Virtual Symbiosis/Augmented Symbiosis/Symbiotic Intelligence</h1>
Dr. Norman L. Johnson
<a href="http://collectivescience.com/deeper_overview.html">Symbiotic Intelligence and the Internet: A Deeper Overview</a>
Kevin Warwick
<a href="http://www.sciencedirect.com/science/article/pii/S0031320311002032">Brain computer interface control via functional connectivity dynamics</a>
Justin C. Sanchez, Babak Mahmoudi, Jack DiGiovanna, Jose C. Principe
<a href="http://www.bme.miami.edu/nrg/publications/journal/journal%2019.pdf">Exploiting co-adaptation for the design of symbiotic neuroprosthetic assistants</a>
Kotaro Hirasawa, Hidemasa Yoshida, Jinglu Hu
<a href="http://onlinelibrary.wiley.com/doi/10.1002/eej.1172/abstract">Learning of symbiotic phenomena between agents by using neural networks</a>

<h1> Attributions </h1>

Pharmacology/Attributions

2011-09-27T21:29:02Z

62.30.249.131:

Pharmacology/Attributions

2011-09-27T21:07:46Z

62.30.249.131:

Pharmacology/Attributions

2011-09-27T20:57:19Z

62.30.249.131:

Digitize Me, Visualize Me, Search Me

2011-09-02T06:51:40Z

62.30.249.131: /* Visualize Me */ added drucker video

[[Image:LifetrackingCover1.jpg|right|318x450px|LifetrackingCover1.jpg]]

= '''Digitize Me, Visualize Me, Search Me: Open Science and its Discontents''' =

= edited by Gary Hall =

__TOC__''' '''

== '''Introduction: On the Limits of Openness (Living Books Mix)''' ==

 

== '''Open Science''' ==

 

'''It’s An Open (Science), Open (Access), Open (Source), Open (Notebook) World''' 

[http://usefulchem.wikispaces.com/ Open Notebook Science ]

Patrick O. Brown, Michael B. Eisen, Harold Varmus

[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0000036 Why PLoS Became a Publisher] 

Sally Murray, Stephen Choi, John Hoey, Claire Kendall, James Maskalyk, and Anita Palepu 

[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091592/pdf/OpenMed-02-e1.pdf??tool=pmcentrez Open Science, Open Access and Open Source Software at ''Open Medicine''] 

 

'''Community Science'''

{{#widget:Vimeo|id=12873908}}

[http://www.psfk.com/2010/09/biocurious-a-community-lab-for-biotechnology.html BioCurious: A Community Lab for Biotechnology]

Richard Stallman

[http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0020047 Free Community Science and the Free Development of Science] 

 

'''‘This Revolution Will Be Digitized’: Online Tools for Open Science ''' 

[http://biogang.openwetware.org/ Biogang]

Bill Hooker 

[http://3quarksdaily.blogs.com/3quarksdaily/2007/01/the_future_of_s.html The Future of Science is Open, Part 3: An Open Science World] 

Chris Patil and Vivian Siegel 

[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2675795/ This Revolution Will Be Digitized: Online Tools for Radical Collaboration] 

 

'''Open Science Publishing'''

Philip E. Bourne

[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877727/?tool=pmcentrez#pcbi.1000787-Hey1 What Do I Want from the Publisher of the Future?] 

Cameron Neylon 

[http://pirsa.org/08090038/ Science in the Open/or/How I Learned to Stop Worrying and Love My Blog]

 

== '''Open Knowledge''' ==

 

'''Open Access to Knowledge''' 

[http://okfn.org/ Open Knowledge Foundation] 

Gaelle Krikorian and Amy Kapczynski, eds, 

[http://www.soros.org/initiatives/information/focus/access/articles_publications/publications/age-of-intellectual-property-20101110/age-of-intellectual-property-20101110.pdf ''Access to Knowledge In the Age of Intellectual Property''] 

 

'''New Models for Open Sharing and Open Research''' Anne H. Margulies[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200 ]

[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0020200 A New Model for Open Sharing] 

Thomas B. Kepler, Marc A. Marti-Renom, Stephen M. Maurer, Arti K. Rai, Ginger Taylor, Matthew H. Todd 

[http://www.publish.csiro.au/nid/51/paper/CH06095.htm Open Source Research - The Power of Us] 

 

'''Open Knowledge and its Discontents'''

J.J. King 

[http://www.metamute.org/proudtobeflesh The Packet Gang: Openness and its Discontents] 

Michael Gurstein

[http://gurstein.wordpress.com/2011/07/03/are-the-open-data-warriors-fighting-for-robin-hood-or-the-sheriff-some-reflections-on-okcon-2011-and-the-emerging-data-divide/ Are the Open Data Warriors Fighting for Robin Hood or the Sheriff?: Some Reflections on OKCon 2011 and the Emerging Data Divide]

 

== '''Open Data''' ==

'''Data-Intensive Science''' Vincent S. Smith 

[http://www.biomedcentral.com/1756-0500/2/113 Data Publication: Towards a Database of Everything] 

Tony Hey, Stewart Tansley, Kristen Tolle, eds 

[http://research.microsoft.com/en-us/collaboration/fourthparadigm/4th_paradigm_book_part4_complete.pdf Scholarly Communication, ''The Fourth Paradigm: Data-Intensive Scientific Discovery''] 

 

'''World of Data''' 

[http://www.freeourdata.org.uk/ Free Our Data] 

Simon Rogers 

[http://www.guardian.co.uk/news/datablog/2010/nov/09/canada-open-data How Canada Became an Open Data and Data Journalism Powerhouse] 

 '''We Can Know It For You'''

Omer Tene 

[http://epubs.utah.edu/index.php/ulr/article/viewArticle/136 What Google Knows: Privacy and Internet Search Engines]

Daniel Chandramohan, Kenji Shibuya, Philip Setel, Sandy Cairncross, Alan D. Lopez, Christopher J. L. Murray, Basia Żaba, Robert W. Snow, Fred Binka

[http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0050057 Should Data from Demographic Surveillance Systems Be Made More Widely Available to Researchers?] 

 

== '''Digitize Me''' ==

'''Encode Me/Decode Me''' [http://www.ornl.gov/sci/techresources/Human_Genome/home.shtml Human Genome Project] 

The ENCODE Project Consortium

[http://pubmedcentralcanada.ca/picrender.cgi?accid=PMC3079585&blobtype=pdf&tool=pmcentrez A User's Guide to the Encyclopaedia of DNA Elements (ENCODE) ] 

[http://www.decodeme.com/about-decodeme deCODEme] 

'''Life-Tracking''' {{#widget:Vimeo|id=27381297}}

[http://quantifiedself.com Quantified Self] 

Gary Wolf 

[http://xrl.us/bh3d4g The Data-Driven Life] 

Aiden R. Doherty and Alan F. Smeaton 

[http://doras.dcu.ie/15300/1/Sensors-03-154-Doherty-ie-edited.pdf Automatically Augmenting Lifelog Events Using Pervasively Generated Content from Millions of People ]Jennifer S. Beaudin, Stephen S. Intille, and Margaret E. Morris

[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794006/?tool=pmcentrez#ref1 To Track or Not to Track: User Reactions to Concepts in Longitudinal Health Monitoring] 

 

'''The Neurological Turn: or, ‘How the Internet Gets Inside Us’'''

<youtube>NhLnoZFCDBM</youtube>

Adam Gopnik 

[http://www.newyorker.com/arts/critics/atlarge/2011/02/14/110214crat_atlarge_gopnik The Information: How the Internet Gets Inside Us] 

N. Katherine Hayles 

[http://www.sciy.org/2010/11/24/hyper-and-deep-attention-the-generational-divide-in-cognitive-modes-by-n-katherine-hayles/ Hyper and Deep Attention: The Generation Divide in Cognitive Modes] 

 

== '''Visualize Me''' ==

 

'''What is Visualization?''' Lev Manovich 

[http://manovich.net/blog/wp-content/uploads/2010/10/manovich_visualization_2010.doc What is Visualization?] 

Nathan Yau 

[http://flowingdata.com/2011/02/23/data-visualization-meets-game-design-to-explore-your-digital-life/ Data Visualization Meets Game Design to Explore your Digital Life] 

[http://bloom.io/ Bloom] 

 

'''Mood-mapping'''

Celeste Biever 

[http://www.newscientist.com/article/dn19200-twitter-mood-maps-reveal-emotional-states-of-america.html Twitter Mood Maps Reveal Emotional States of America] 

[http://www.newscientist.com/articlevideo/dn19200/221111468001-twitter-mood-maps-reveal-emotional-states-of-america.html Twitter mood video] 

<youtube>ZglPWYb8X2o</youtube>

[http://www.moodscope.com/ Moodscope] 

[http://www.mappiness.org.uk Mappiness] 

 

'''The Visualized Human '''

Nicholas Felton

[http://feltron.com/ The Annual Felton Report] 

Deb Roy

[http://www.youtube.com/watch?v=RE4ce4mexrU&feature=youtu.be The Birth of a Word ] 

<youtube>RE4ce4mexrU</youtube>

Johanna Drucker

[http://mitworld.mit.edu/video/796 Humanistic Approaches to the Graphical Expression of Interpretation] 

{{#widget:Drucker Video}}

 

== '''Search Me''' ==

 

'''Search-Engine Science'''

Emily H. Chan, Vikram Sahai, Corrie Conrad, and John S. Brownstein

[http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC3104029&tool=pmcentrez Using Web Search Query Data to Monitor Dengue Epidemics: A New Model for Neglected Tropical Disease Surveillance]

Annie Y.S. Lau, Enrico Coiera, Tatjana Zrimec, and Paul Compton

[http://pubmedcentralcanada.ca/articlerender.cgi?accid=PMC2956236&tool=pmcentrez Clinician Search Behaviors May Be Influenced by Search Engine Design] 

 

'''The Science of Control''' 

Alession Signorini Alberto Maria Segre, Philip M. Polgreen

[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0019467 The Use of Twitter to Track Levels of Disease Activity and Public Concern in the U.S. During the Influenza A H1N1 Pandemic] 

David Parry

[http://www.livingbooksaboutlife.org/books/Surveillance ''Surveillance'' ] 

Felix Stalder and Christine Mayer 

[http://felix.openflows.com/node/113 The Second Index: Search Engines, Personalization and Surveillance (Deep Search)] 

'''Deep Search'''

{{#widget:Vimeo|id=13456992}}

Michael K. Bergman 

[http://quod.lib.umich.edu/cgi/t/text/text-idx?c=jep;view=text;rgn=main;idno=3336451.0007.104 The Deep Web: Surfacing Hidden Value]

Clare Birchall 

[http://www.livingbooksaboutlife.org/books/The_in/visible The Invisible Web, ''The In/Visible'']

 '''Media Gifts?'''

{{#widget:Vimeo|id=8223187}}

[http://www.suicidemachine.org/ Web 2.0 Suicide Machine]

[http://www.freedomboxfoundation.org/ Freedom Box Foundation]

[http://navasse.net/traceblog/about.html Traceblog]

[http://turbulence.org/Works/JJPS/extension The JJPS Firefox Extension]

 

==

== '''Appendix''' ==

<youtube>ukNkx45Ua0Y</youtube>

Karl Popper, The Open Society and its Enemies